Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_IVL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1029_IVL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_IVL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai


[W::hts_idx_load3] The index file is older than the data file: 1029_IVL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59954717 total, 42175 skipped (flags/unmapped)
Fragments: 30094598 total (29789863 tlen-paired, 2500 hash-paired, 351 singletons, 10691 discordant, 291193 orphans, 7445 too large [>5000 bp], 9058866 duplicates)
Reads: 63769026 total, 35608 skipped (flags/unmapped)
Fragments: 32011021 total (31698280 tlen-paired, 2359 hash-paired, 386 singletons, 7236 discordant, 302760 orphans, 7261 too large [>5000 bp], 9419753 duplicates)
Reads: 70332435 total, 68029 skipped (flags/unmapped)
Fragments: 35438766 total (34482661 tlen-paired, 2168 hash-paired, 365 singletons, 185289 discordant, 768283 orphans, 77761 too large [>5000 bp], 10671244 duplicates)
Reads: 69269288 total, 40269 skipped (flags/unmapped)
Fragments: 34774290 total (34404442 tlen-paired, 3371 hash-paired, 321 singletons, 10980 discordant, 355176 orphans, 17968 too large [>5000 bp], 10493225 duplicates)