Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_44E-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_44E-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_44E-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_44E-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66416797 total, 50739 skipped (flags/unmapped)
Fragments: 33371957 total (32963419 tlen-paired, 3387 hash-paired, 375 singletons, 11195 discordant, 393581 orphans, 8050 too large [>5000 bp], 10877311 duplicates)
Reads: 70344783 total, 44082 skipped (flags/unmapped)
Fragments: 35347588 total (34926388 tlen-paired, 2032 hash-paired, 466 singletons, 7579 discordant, 411123 orphans, 8557 too large [>5000 bp], 11240131 duplicates)
Reads: 77017919 total, 48505 skipped (flags/unmapped)
Fragments: 38699771 total (38215228 tlen-paired, 4128 hash-paired, 330 singletons, 11401 discordant, 468684 orphans, 19443 too large [>5000 bp], 12623208 duplicates)
Reads: 78826835 total, 85133 skipped (flags/unmapped)
Fragments: 39802088 total (38436393 tlen-paired, 2643 hash-paired, 401 singletons, 272148 discordant, 1090503 orphans, 114215 too large [>5000 bp], 12898175 duplicates)