Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_N6Y-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_N6Y-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_N6Y-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_N6Y-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 231571107 total, 197235 skipped (flags/unmapped)
Fragments: 116659278 total (114621057 tlen-paired, 11282 hash-paired, 1501 singletons, 27615 discordant, 1997823 orphans, 27320 too large [>5000 bp], 54142053 duplicates)
Reads: 252413930 total, 169152 skipped (flags/unmapped)
Fragments: 127212644 total (124860203 tlen-paired, 17006 hash-paired, 1420 singletons, 25095 discordant, 2308920 orphans, 64915 too large [>5000 bp], 59688109 duplicates)
Reads: 256573903 total, 159839 skipped (flags/unmapped)
Fragments: 129348408 total (126986374 tlen-paired, 8947 hash-paired, 1822 singletons, 20151 discordant, 2331114 orphans, 25092 too large [>5000 bp], 59762268 duplicates)
Reads: 285108455 total, 350912 skipped (flags/unmapped)
Fragments: 144835204 total (137034452 tlen-paired, 13036 hash-paired, 1967 singletons, 1635831 discordant, 6149918 orphans, 619510 too large [>5000 bp], 66955384 duplicates)