Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 278592818 total, 230058 skipped (flags/unmapped)
Fragments: 140080232 total (138159390 tlen-paired, 13297 hash-paired, 2241 singletons, 42415 discordant, 1862889 orphans, 33713 too large [>5000 bp], 71922769 duplicates)
Reads: 305838399 total, 192973 skipped (flags/unmapped)
Fragments: 153822010 total (151705059 tlen-paired, 14860 hash-paired, 2225 singletons, 29997 discordant, 2069869 orphans, 36750 too large [>5000 bp], 79047756 duplicates)
Reads: 330641323 total, 203424 skipped (flags/unmapped)
Fragments: 166290988 total (163939898 tlen-paired, 14130 hash-paired, 2087 singletons, 45633 discordant, 2289240 orphans, 73625 too large [>5000 bp], 86790641 duplicates)
Reads: 338314119 total, 410256 skipped (flags/unmapped)
Fragments: 171165010 total (164256041 tlen-paired, 19681 hash-paired, 2485 singletons, 1389551 discordant, 5497252 orphans, 536790 too large [>5000 bp], 88460856 duplicates)