Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_QQW-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_QQW-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_QQW-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_QQW-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 244293202 total, 197939 skipped (flags/unmapped)
Fragments: 122584297 total (121412011 tlen-paired, 13873 hash-paired, 1832 singletons, 30504 discordant, 1126077 orphans, 27289 too large [>5000 bp], 56708420 duplicates)
Reads: 266033559 total, 169492 skipped (flags/unmapped)
Fragments: 133522647 total (132166033 tlen-paired, 18942 hash-paired, 1763 singletons, 27561 discordant, 1308348 orphans, 64442 too large [>5000 bp], 62411916 duplicates)
Reads: 273751191 total, 166695 skipped (flags/unmapped)
Fragments: 137410162 total (136077004 tlen-paired, 13640 hash-paired, 2078 singletons, 23198 discordant, 1294242 orphans, 30246 too large [>5000 bp], 63460622 duplicates)
Reads: 295344345 total, 351327 skipped (flags/unmapped)
Fragments: 148785141 total (144740389 tlen-paired, 17062 hash-paired, 2325 singletons, 825810 discordant, 3199555 orphans, 312308 too large [>5000 bp], 69053615 duplicates)