Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_EHU-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EHU-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EHU-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EHU-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 273125319 total, 214156 skipped (flags/unmapped)
Fragments: 137443053 total (135352241 tlen-paired, 13028 hash-paired, 1809 singletons, 35721 discordant, 2040254 orphans, 33560 too large [>5000 bp], 69357654 duplicates)
Reads: 297740659 total, 193344 skipped (flags/unmapped)
Fragments: 149877155 total (147505245 tlen-paired, 21841 hash-paired, 1657 singletons, 32700 discordant, 2315712 orphans, 55187 too large [>5000 bp], 76555226 duplicates)
Reads: 304357418 total, 178595 skipped (flags/unmapped)
Fragments: 153241300 total (150837306 tlen-paired, 11048 hash-paired, 2179 singletons, 25819 discordant, 2364948 orphans, 31675 too large [>5000 bp], 77008284 duplicates)
Reads: 334198979 total, 393830 skipped (flags/unmapped)
Fragments: 169364505 total (161573821 tlen-paired, 14107 hash-paired, 2372 singletons, 1616666 discordant, 6157539 orphans, 618025 too large [>5000 bp], 85384174 duplicates)