Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-72469e-N1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-72469e-N1_B23T7FYLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-72469e-N1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-72469e-N1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 381497304 total, 368549 skipped (flags/unmapped)
Fragments: 192884478 total (188065940 tlen-paired, 18811 hash-paired, 3073 singletons, 60772 discordant, 4735882 orphans, 49377 too large [>5000 bp], 107889019 duplicates)
Reads: 415722093 total, 332008 skipped (flags/unmapped)
Fragments: 210277156 total (204760066 tlen-paired, 18430 hash-paired, 2507 singletons, 58459 discordant, 5437694 orphans, 137987 too large [>5000 bp], 119243225 duplicates)
Reads: 419844834 total, 327176 skipped (flags/unmapped)
Fragments: 212414222 total (206927341 tlen-paired, 19121 hash-paired, 3003 singletons, 47462 discordant, 5417295 orphans, 54756 too large [>5000 bp], 118611553 duplicates)
Reads: 476306413 total, 673019 skipped (flags/unmapped)
Fragments: 243613868 total (225111881 tlen-paired, 32725 hash-paired, 3508 singletons, 3906880 discordant, 14558874 orphans, 1484020 too large [>5000 bp], 135226851 duplicates)