Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_LC8-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LC8-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LC8-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LC8-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 254705748 total, 340990 skipped (flags/unmapped)
Fragments: 128322582 total (125875448 tlen-paired, 17446 hash-paired, 1852 singletons, 62124 discordant, 2365712 orphans, 43579 too large [>5000 bp], 61992518 duplicates)
Reads: 280272581 total, 285147 skipped (flags/unmapped)
Fragments: 141256780 total (138531974 tlen-paired, 12497 hash-paired, 1842 singletons, 53939 discordant, 2656528 orphans, 66122 too large [>5000 bp], 69042309 duplicates)
Reads: 284494052 total, 280849 skipped (flags/unmapped)
Fragments: 143427756 total (140634376 tlen-paired, 11578 hash-paired, 2146 singletons, 48781 discordant, 2730875 orphans, 45356 too large [>5000 bp], 68979822 duplicates)
Reads: 312721584 total, 517576 skipped (flags/unmapped)
Fragments: 158850559 total (150264831 tlen-paired, 12787 hash-paired, 2384 singletons, 1759579 discordant, 6810978 orphans, 658126 too large [>5000 bp], 76400266 duplicates)