Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-97f977-N1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-97f977-N1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-97f977-N1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-97f977-N1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 247177310 total, 204032 skipped (flags/unmapped)
Fragments: 124342633 total (122532644 tlen-paired, 14495 hash-paired, 1778 singletons, 28872 discordant, 1764844 orphans, 27317 too large [>5000 bp], 59184599 duplicates)
Reads: 272504267 total, 157188 skipped (flags/unmapped)
Fragments: 137161773 total (135099850 tlen-paired, 13076 hash-paired, 2032 singletons, 20196 discordant, 2026619 orphans, 26092 too large [>5000 bp], 65202199 duplicates)
Reads: 294892974 total, 171771 skipped (flags/unmapped)
Fragments: 148402609 total (146184395 tlen-paired, 12044 hash-paired, 1691 singletons, 29649 discordant, 2174830 orphans, 46253 too large [>5000 bp], 71354292 duplicates)
Reads: 301928305 total, 368810 skipped (flags/unmapped)
Fragments: 152991701 total (146072345 tlen-paired, 13961 hash-paired, 2154 singletons, 1411214 discordant, 5492027 orphans, 535137 too large [>5000 bp], 72616423 duplicates)