Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BCX2-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCX2-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCX2-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCX2-N1-BDNA-1_B23T7FYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 279280242 total, 221485 skipped (flags/unmapped)
Fragments: 140920554 total (138039986 tlen-paired, 12500 hash-paired, 1790 singletons, 29315 discordant, 2836963 orphans, 28201 too large [>5000 bp], 71675516 duplicates)
Reads: 308542064 total, 183968 skipped (flags/unmapped)
Fragments: 155796585 total (152452839 tlen-paired, 10401 hash-paired, 2356 singletons, 20751 discordant, 3310238 orphans, 38760 too large [>5000 bp], 78880708 duplicates)
Reads: 334191640 total, 197548 skipped (flags/unmapped)
Fragments: 168700900 total (165084256 tlen-paired, 13303 hash-paired, 2012 singletons, 31169 discordant, 3570160 orphans, 82232 too large [>5000 bp], 86618141 duplicates)
Reads: 347409503 total, 420936 skipped (flags/unmapped)
Fragments: 177181133 total (165601243 tlen-paired, 12535 hash-paired, 2681 singletons, 2386448 discordant, 9178226 orphans, 903604 too large [>5000 bp], 89148954 duplicates)