.command.sh - Workdir - SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_11H)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d109411bbead1f5f1ec6a2c14bdbd0/.command.sh
Size: 385 bytes
Task: SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_11H)
Attempt

Content

#!/bin/bash -Ceuo pipefail
python /usr/local/bin/export_viewer.py \
    --probe-agg 1029_11H_probe_agg.tsv.gz \
    --pairs pairs.tsv \
    --segments 1029_11H_segments.tsv \
    --output-dir viewer \
    --specimens-file <(echo "1029_11H") \
    --workers 4

cat <<-END_VERSIONS > versions.yml
"SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER":
    soma-cnv: 20260604-3cb5ec5
END_VERSIONS