Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_0I-T1-TDNA-1_A23KCGYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_0I-T1-TDNA-1_A23KCGYLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_0I-T1-TDNA-1_A23KCGYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0I-T1-TDNA-1_A23KCGYLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 286942299 total, 516330 skipped (flags/unmapped)
Fragments: 144338016 total (141762412 tlen-paired, 47827 hash-paired, 1570 singletons, 148730 discordant, 2377477 orphans, 64492 too large [>5000 bp], 81233815 duplicates)
Reads: 339342180 total, 465757 skipped (flags/unmapped)
Fragments: 170705242 total (167848171 tlen-paired, 39414 hash-paired, 1362 singletons, 114698 discordant, 2701597 orphans, 84449 too large [>5000 bp], 97929406 duplicates)
Reads: 330760659 total, 700559 skipped (flags/unmapped)
Fragments: 167480903 total (160175067 tlen-paired, 43413 hash-paired, 1827 singletons, 1246289 discordant, 6014307 orphans, 557214 too large [>5000 bp], 94364829 duplicates)
Reads: 379294412 total, 424365 skipped (flags/unmapped)
Fragments: 190761781 total (187834785 tlen-paired, 32608 hash-paired, 1814 singletons, 80317 discordant, 2812257 orphans, 80278 too large [>5000 bp], 107895644 duplicates)