Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 576776326 total, 1285130 skipped (flags/unmapped)
Fragments: 289417709 total (285264122 tlen-paired, 128097 hash-paired, 2799 singletons, 284130 discordant, 3738561 orphans, 198569 too large [>5000 bp], 201102235 duplicates)
Reads: 621705200 total, 1143539 skipped (flags/unmapped)
Fragments: 312066921 total (307751907 tlen-paired, 128226 hash-paired, 2486 singletons, 198673 discordant, 3985629 orphans, 207967 too large [>5000 bp], 220956854 duplicates)
Reads: 614477430 total, 997257 skipped (flags/unmapped)
Fragments: 308409419 total (304517827 tlen-paired, 96848 hash-paired, 3191 singletons, 129373 discordant, 3662180 orphans, 163353 too large [>5000 bp], 215434761 duplicates)
Reads: 671521553 total, 1521272 skipped (flags/unmapped)
Fragments: 338178787 total (328203410 tlen-paired, 143109 hash-paired, 3175 singletons, 1861873 discordant, 7967220 orphans, 806551 too large [>5000 bp], 237769024 duplicates)