.command.sh - Workdir - SOMATIC_CNV_CALLING:BGZIP_TABIX_TUMOR_ONLY (1029_16G)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/cf79b6687da7bd97edf15d20ad941b/.command.sh
Size: 284 bytes
Task: SOMATIC_CNV_CALLING:BGZIP_TABIX_TUMOR_ONLY (1029_16G)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bgzip -c 1029_16G_somatic.vcf > 1029_16G_somatic.vcf.gz
tabix -p vcf 1029_16G_somatic.vcf.gz

cat <<-END_VERSIONS > versions.yml
"SOMATIC_CNV_CALLING:BGZIP_TABIX_TUMOR_ONLY":
    htslib: $(tabix --version | head -1 | sed 's/tabix (htslib) //')
END_VERSIONS