File Info
- Filename
- Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/variant_calling/chip_variants/Sig_18_Blood/somatic_normal/Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv
- Size
- 8.8 KB
- Workflow Run
- somacnv-bwcompat-20260608-203934
- Published
- Jun 08, 2026 1:43 PM
Content
View in new tab| #<METADATA>SAMPLE=Sig_18_Blood | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 2.76553e-06 | 3.50751e-06 | 2.54306e-06 | 0 | 2.92768e-06 | 2.623e-05 | 2.63287e-06 | 0.998898 | 0.000168355 | 0.000614553 | 0.000278356 | 39876 | 1599 |
| AAC | GTT | 0 | 5.63153e-06 | 9.77899e-05 | 5.41267e-06 | 0 | 6.33937e-05 | 7.0664e-06 | 5.3568e-06 | 0.998667 | 0.000461414 | 0.000413979 | 0.000272664 | 18703 | 880 |
| AAG | CTT | 0 | 4.27399e-06 | 9.73544e-05 | 3.75283e-06 | 0 | 4.01737e-06 | 6.77066e-05 | 3.89146e-06 | 0.998661 | 0.000151865 | 0.000601305 | 0.000404645 | 27429 | 1501 |
| AAT | ATT | 0 | 4.47685e-06 | 0.000107236 | 4.2693e-06 | 0 | 2.84163e-05 | 4.52175e-06 | 4.2132e-05 | 0.99899 | 0.000235315 | 0.000410796 | 0.000173003 | 23698 | 1018 |
| ACA | TGT | 0.000762437 | 0 | 3.92787e-06 | 8.75947e-06 | 0.0011708 | 0 | 3.7654e-06 | 1.09562e-05 | 0.996807 | 0.000145596 | 0.000783435 | 0.000303519 | 26686 | 2541 |
| ACC | GGT | 0.0005647 | 0 | 5.1971e-06 | 6.2165e-06 | 0.000280564 | 0 | 4.99508e-06 | 8.82637e-06 | 0.997693 | 0.000817206 | 0.000365332 | 0.000253618 | 20108 | 1673 |
| ACG | CGT | 0.000891569 | 0 | 4.57118e-05 | 4.23296e-05 | 0.00203662 | 0 | 1.16212e-05 | 2.93849e-05 | 0.989916 | 0.00301236 | 0.00214654 | 0.00186755 | 8659 | 1092 |
| ACT | AGT | 0.000409797 | 0 | 1.50493e-05 | 5.60048e-06 | 0.000381736 | 0 | 1.00296e-05 | 5.67055e-06 | 0.997851 | 0.000432993 | 0.000434392 | 0.000453746 | 20054 | 1667 |
| AGA | TCT | 6.64166e-05 | 3.48837e-06 | 0 | 0.000154251 | 0.000100086 | 7.056e-06 | 0 | 0.000189008 | 0.998141 | 0.000103857 | 0.000858315 | 0.000376258 | 29426 | 1831 |
| AGC | GCT | 6.59079e-06 | 3.86888e-06 | 0 | 0.000552108 | 8.27246e-05 | 3.83989e-06 | 0 | 0.00105343 | 0.997071 | 8.86045e-05 | 0.000857313 | 0.000280744 | 26440 | 2674 |
| AGG | CCT | 2.89884e-05 | 3.43524e-06 | 0 | 0.000136247 | 3.95972e-05 | 3.37881e-06 | 0 | 0.000201332 | 0.998357 | 0.000312837 | 0.00055193 | 0.00036517 | 30394 | 2351 |
| AGT | ACT | 5.67055e-06 | 1.00296e-05 | 0 | 0.000381736 | 5.60048e-06 | 1.50493e-05 | 0 | 0.000409797 | 0.997851 | 0.000432993 | 0.000434392 | 0.000453746 | 20054 | 1667 |
| ATA | TAT | 5.78387e-06 | 6.41752e-06 | 8.82532e-05 | 0 | 5.32594e-05 | 0.00020719 | 6.23534e-05 | 0 | 0.997962 | 0.000683508 | 0.000756208 | 0.000175078 | 17705 | 840 |
| ATC | GAT | 5.94134e-06 | 0.000129885 | 7.27674e-06 | 0 | 5.94178e-06 | 0.000153869 | 6.16182e-06 | 0 | 0.99809 | 1.85503e-05 | 0.000923869 | 0.000658852 | 16846 | 893 |
| ATG | CAT | 4.45187e-06 | 2.83802e-05 | 1.58145e-05 | 0 | 4.38273e-06 | 7.32932e-05 | 4.91034e-06 | 0 | 0.997063 | 0.000342384 | 0.00140799 | 0.00105552 | 22831 | 1159 |
| ATT | AAT | 4.2132e-05 | 4.52175e-06 | 2.84163e-05 | 0 | 4.2693e-06 | 0.000107236 | 4.47685e-06 | 0 | 0.99899 | 0.000235315 | 0.000410796 | 0.000173003 | 23698 | 1018 |
| CAA | TTG | 0 | 4.76534e-05 | 9.20468e-05 | 4.43837e-06 | 0 | 4.75174e-06 | 7.15882e-06 | 4.46172e-06 | 0.998788 | 0.000397922 | 0.000249808 | 0.000403834 | 22533 | 1030 |
| CAC | GTG | 0 | 2.77573e-05 | 5.14012e-05 | 3.89762e-06 | 0 | 2.62406e-05 | 5.92528e-05 | 4.0992e-06 | 0.996753 | 0.000675845 | 0.0013765 | 0.00102198 | 25690 | 1398 |
| CAG | CTG | 0 | 2.68492e-06 | 6.27609e-05 | 2.62503e-06 | 0 | 7.08348e-05 | 2.73962e-05 | 2.63897e-06 | 0.997664 | 0.000754348 | 0.000526074 | 0.000886541 | 38462 | 2445 |
| CAT | ATG | 0 | 4.91034e-06 | 7.32932e-05 | 4.38273e-06 | 0 | 1.58145e-05 | 2.83802e-05 | 4.45187e-06 | 0.997063 | 0.000342384 | 0.00140799 | 0.00105552 | 22831 | 1159 |
| CCA | TGG | 0.00054558 | 0 | 3.34177e-06 | 5.15979e-05 | 0.000297362 | 0 | 3.26696e-06 | 3.69434e-06 | 0.998322 | 6.1772e-05 | 0.000545764 | 0.000166019 | 30719 | 2463 |
| CCC | GGG | 0.000112262 | 0 | 3.57042e-06 | 4.73954e-05 | 0.000108038 | 0 | 3.84978e-06 | 4.46317e-06 | 0.998337 | 0.000258616 | 0.000656207 | 0.000468392 | 29809 | 1896 |
| CCG | CGG | 0.000917788 | 0 | 7.72714e-06 | 0.000151373 | 0.000343444 | 0 | 7.99083e-06 | 3.37082e-05 | 0.991349 | 0.00330774 | 0.00192718 | 0.00195393 | 13374 | 1474 |
| CCT | AGG | 0.000201332 | 0 | 3.37881e-06 | 3.95972e-05 | 0.000136247 | 0 | 3.43524e-06 | 2.89884e-05 | 0.998357 | 0.000312837 | 0.00055193 | 0.00036517 | 30394 | 2351 |
| CGA | TCG | 0.000160896 | 1.39363e-05 | 0 | 5.10883e-05 | 6.68993e-05 | 1.39705e-05 | 0 | 0.000147311 | 0.994532 | 0.00302761 | 0.000860901 | 0.00112563 | 7194 | 753 |
| CGC | GCG | 0.00126973 | 1.04701e-05 | 0 | 0.00242775 | 0.000317174 | 1.12998e-05 | 0 | 0.00147897 | 0.988546 | 0.00242649 | 0.00151761 | 0.00199409 | 11587 | 1586 |
| CGG | CCG | 3.37082e-05 | 7.99083e-06 | 0 | 0.000343444 | 0.000151373 | 7.72714e-06 | 0 | 0.000917788 | 0.991349 | 0.00330774 | 0.00192718 | 0.00195393 | 13374 | 1474 |
| CGT | ACG | 2.93849e-05 | 1.16212e-05 | 0 | 0.00203662 | 4.23296e-05 | 4.57118e-05 | 0 | 0.000891569 | 0.989916 | 0.00301236 | 0.00214654 | 0.00186755 | 8659 | 1092 |
| CTA | TAG | 8.04179e-06 | 2.32104e-05 | 9.01245e-06 | 0 | 7.94655e-06 | 0.000255352 | 8.26436e-06 | 0 | 0.997803 | 0.000491446 | 0.00114799 | 0.000246188 | 12591 | 678 |
| CTC | GAG | 3.67364e-06 | 9.25377e-05 | 3.83088e-06 | 0 | 3.72357e-06 | 0.000295315 | 4.12919e-06 | 0 | 0.998447 | 5.85283e-05 | 0.000764329 | 0.000327033 | 27825 | 1764 |
| CTG | CAG | 2.63897e-06 | 2.73962e-05 | 7.08348e-05 | 0 | 2.62503e-06 | 6.27609e-05 | 2.68492e-06 | 0 | 0.997664 | 0.000754348 | 0.000526074 | 0.000886541 | 38462 | 2445 |
| CTT | AAG | 3.89146e-06 | 6.77066e-05 | 4.01737e-06 | 0 | 3.75283e-06 | 9.73544e-05 | 4.27399e-06 | 0 | 0.998661 | 0.000151865 | 0.000601305 | 0.000404645 | 27429 | 1501 |
| GAA | TTC | 0 | 3.82833e-06 | 7.37966e-06 | 3.71884e-06 | 0 | 4.2192e-05 | 1.26661e-05 | 3.72258e-06 | 0.999414 | 9.69108e-05 | 0.000298567 | 0.000117056 | 26971 | 1180 |
| GAC | GTC | 0 | 5.91859e-06 | 0.000135749 | 5.69412e-06 | 0 | 3.59281e-05 | 8.49352e-06 | 6.47967e-06 | 0.998317 | 0.000134583 | 0.00100255 | 0.000347252 | 17566 | 880 |
| GAG | CTC | 0 | 4.12919e-06 | 0.000295315 | 3.72357e-06 | 0 | 3.83088e-06 | 9.25377e-05 | 3.67364e-06 | 0.998447 | 5.85283e-05 | 0.000764329 | 0.000327033 | 27825 | 1764 |
| GAT | ATC | 0 | 6.16182e-06 | 0.000153869 | 5.94178e-06 | 0 | 7.27674e-06 | 0.000129885 | 5.94134e-06 | 0.99809 | 1.85503e-05 | 0.000923869 | 0.000658852 | 16846 | 893 |
| GCA | TGC | 0.00112276 | 0 | 3.83041e-06 | 5.37371e-06 | 0.00144303 | 0 | 3.8176e-06 | 1.50799e-05 | 0.996357 | 0.00011435 | 0.000627393 | 0.000307412 | 26348 | 2779 |
| GCC | GGC | 0.000940093 | 0 | 8.99025e-06 | 5.97013e-06 | 0.000612724 | 0 | 4.10361e-06 | 5.36092e-05 | 0.997317 | 0.000317797 | 0.000336648 | 0.000403314 | 27521 | 2474 |
| GCG | CGC | 0.00147897 | 0 | 1.12998e-05 | 0.000317174 | 0.00242775 | 0 | 1.04701e-05 | 0.00126973 | 0.988546 | 0.00242649 | 0.00151761 | 0.00199409 | 11587 | 1586 |
| GCT | AGC | 0.00105343 | 0 | 3.83989e-06 | 8.27246e-05 | 0.000552108 | 0 | 3.86888e-06 | 6.59079e-06 | 0.997071 | 8.86045e-05 | 0.000857313 | 0.000280744 | 26440 | 2674 |
| GGA | TCC | 3.93491e-06 | 3.75838e-06 | 0 | 8.94445e-05 | 4.58965e-05 | 3.81572e-06 | 0 | 1.77645e-05 | 0.99892 | 0.000425522 | 0.000188463 | 0.000301865 | 26832 | 1462 |
| GGC | GCC | 5.36092e-05 | 4.10361e-06 | 0 | 0.000612724 | 5.97013e-06 | 8.99025e-06 | 0 | 0.000940093 | 0.997317 | 0.000317797 | 0.000336648 | 0.000403314 | 27521 | 2474 |
| GGG | CCC | 4.46317e-06 | 3.84978e-06 | 0 | 0.000108038 | 4.73954e-05 | 3.57042e-06 | 0 | 0.000112262 | 0.998337 | 0.000258616 | 0.000656207 | 0.000468392 | 29809 | 1896 |
| GGT | ACC | 8.82637e-06 | 4.99508e-06 | 0 | 0.000280564 | 6.2165e-06 | 5.1971e-06 | 0 | 0.0005647 | 0.997693 | 0.000817206 | 0.000365332 | 0.000253618 | 20108 | 1673 |
| GTA | TAC | 1.11165e-05 | 4.07795e-05 | 0.000128144 | 0 | 7.38267e-06 | 9.04739e-06 | 0.000154712 | 0 | 0.998215 | 5.09825e-05 | 0.000637154 | 0.000745497 | 13547 | 662 |
| GTC | GAC | 6.47967e-06 | 8.49352e-06 | 3.59281e-05 | 0 | 5.69412e-06 | 0.000135749 | 5.91859e-06 | 0 | 0.998317 | 0.000134583 | 0.00100255 | 0.000347252 | 17566 | 880 |
| GTG | CAC | 4.0992e-06 | 5.92528e-05 | 2.62406e-05 | 0 | 3.89762e-06 | 5.14012e-05 | 2.77573e-05 | 0 | 0.996753 | 0.000675845 | 0.0013765 | 0.00102198 | 25690 | 1398 |
| GTT | AAC | 5.3568e-06 | 7.0664e-06 | 6.33937e-05 | 0 | 5.41267e-06 | 9.77899e-05 | 5.63153e-06 | 0 | 0.998667 | 0.000461414 | 0.000413979 | 0.000272664 | 18703 | 880 |
| TAA | TTA | 0 | 5.50303e-06 | 6.51699e-06 | 3.15156e-05 | 0 | 2.63554e-05 | 6.04045e-06 | 5.2585e-05 | 0.998494 | 0.000201538 | 0.00067966 | 0.00049592 | 20365 | 909 |
| TAC | GTA | 0 | 0.000154712 | 9.04739e-06 | 7.38267e-06 | 0 | 0.000128144 | 4.07795e-05 | 1.11165e-05 | 0.998215 | 5.09825e-05 | 0.000637154 | 0.000745497 | 13547 | 662 |
| TAG | CTA | 0 | 8.26436e-06 | 0.000255352 | 7.94655e-06 | 0 | 9.01245e-06 | 2.32104e-05 | 8.04179e-06 | 0.997803 | 0.000491446 | 0.00114799 | 0.000246188 | 12591 | 678 |
| TAT | ATA | 0 | 6.23534e-05 | 0.00020719 | 5.32594e-05 | 0 | 8.82532e-05 | 6.41752e-06 | 5.78387e-06 | 0.997962 | 0.000683508 | 0.000756208 | 0.000175078 | 17705 | 840 |
| TCA | TGA | 0.000350999 | 0 | 4.04762e-06 | 4.78858e-06 | 0.000442489 | 0 | 4.14364e-06 | 7.2966e-06 | 0.998361 | 0.000169461 | 0.000346123 | 0.000309968 | 25747 | 1796 |
| TCC | GGA | 1.77645e-05 | 0 | 3.81572e-06 | 4.58965e-05 | 8.94445e-05 | 0 | 3.75838e-06 | 3.93491e-06 | 0.99892 | 0.000425522 | 0.000188463 | 0.000301865 | 26832 | 1462 |
| TCG | CGA | 0.000147311 | 0 | 1.39705e-05 | 6.68993e-05 | 5.10883e-05 | 0 | 1.39363e-05 | 0.000160896 | 0.994532 | 0.00302761 | 0.000860901 | 0.00112563 | 7194 | 753 |
| TCT | AGA | 0.000189008 | 0 | 7.056e-06 | 0.000100086 | 0.000154251 | 0 | 3.48837e-06 | 6.64166e-05 | 0.998141 | 0.000103857 | 0.000858315 | 0.000376258 | 29426 | 1831 |
| TGA | TCA | 7.2966e-06 | 4.14364e-06 | 0 | 0.000442489 | 4.78858e-06 | 4.04762e-06 | 0 | 0.000350999 | 0.998361 | 0.000169461 | 0.000346123 | 0.000309968 | 25747 | 1796 |
| TGC | GCA | 1.50799e-05 | 3.8176e-06 | 0 | 0.00144303 | 5.37371e-06 | 3.83041e-06 | 0 | 0.00112276 | 0.996357 | 0.00011435 | 0.000627393 | 0.000307412 | 26348 | 2779 |
| TGG | CCA | 3.69434e-06 | 3.26696e-06 | 0 | 0.000297362 | 5.15979e-05 | 3.34177e-06 | 0 | 0.00054558 | 0.998322 | 6.1772e-05 | 0.000545764 | 0.000166019 | 30719 | 2463 |
| TGT | ACA | 1.09562e-05 | 3.7654e-06 | 0 | 0.0011708 | 8.75947e-06 | 3.92787e-06 | 0 | 0.000762437 | 0.996807 | 0.000145596 | 0.000783435 | 0.000303519 | 26686 | 2541 |
| TTA | TAA | 5.2585e-05 | 6.04045e-06 | 2.63554e-05 | 0 | 3.15156e-05 | 6.51699e-06 | 5.50303e-06 | 0 | 0.998494 | 0.000201538 | 0.00067966 | 0.00049592 | 20365 | 909 |
| TTC | GAA | 3.72258e-06 | 1.26661e-05 | 4.2192e-05 | 0 | 3.71884e-06 | 7.37966e-06 | 3.82833e-06 | 0 | 0.999414 | 9.69108e-05 | 0.000298567 | 0.000117056 | 26971 | 1180 |
| TTG | CAA | 4.46172e-06 | 7.15882e-06 | 4.75174e-06 | 0 | 4.43837e-06 | 9.20468e-05 | 4.76534e-05 | 0 | 0.998788 | 0.000397922 | 0.000249808 | 0.000403834 | 22533 | 1030 |
| TTT | AAA | 2.63287e-06 | 2.623e-05 | 2.92768e-06 | 0 | 2.54306e-06 | 3.50751e-06 | 2.76553e-06 | 0 | 0.998898 | 0.000168355 | 0.000614553 | 0.000278356 | 39876 | 1599 |
66 rows