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HCC1395_BL.mosdepth.summary.txt
Full Path
s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/reports/raw_qc/mosdepth/HCC1395_BL/HCC1395_BL.mosdepth.summary.txt
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9.6 KB
Workflow Run
somacnv-bwcompat-20260608-203934
Published
Jun 08, 2026 1:44 PM

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chrom	length	bases	mean	min	max
chr1	248956422	40371	0.00	0	8
chr1_region	0	0	0.00	0	0
chr2	242193529	50858	0.00	0	89
chr2_region	0	0	0.00	0	0
chr3	198295559	24183	0.00	0	3
chr3_region	0	0	0.00	0	0
chr4	190214555	20499	0.00	0	2
chr4_region	0	0	0.00	0	0
chr5	181538259	21714	0.00	0	3
chr5_region	0	0	0.00	0	0
chr6	170805979	17386	0.00	0	5
chr6_region	0	0	0.00	0	0
chr7	159345973	98372	0.00	0	196
chr7_region	0	0	0.00	0	0
chr8	145138636	14093	0.00	0	2
chr8_region	0	0	0.00	0	0
chr9	138394717	25038	0.00	0	9
chr9_region	0	0	0.00	0	0
chr10	133797422	13978	0.00	0	11
chr10_region	0	0	0.00	0	0
chr11	135086622	13776	0.00	0	4
chr11_region	0	0	0.00	0	0
chr12	133275309	11963	0.00	0	4
chr12_region	0	0	0.00	0	0
chr13	114364328	163766	0.00	0	161
chr13_region	0	0	0.00	0	0
chr14	107043718	10070	0.00	0	14
chr14_region	0	0	0.00	0	0
chr15	101991189	22844	0.00	0	31
chr15_region	0	0	0.00	0	0
chr16	90338345	7537	0.00	0	3
chr16_region	0	0	0.00	0	0
chr17	83257441	4983	0.00	0	2
chr17_region	0	0	0.00	0	0
chr18	80373285	83733	0.00	0	36
chr18_region	0	0	0.00	0	0
chr19	58617616	4680	0.00	0	3
chr19_region	0	0	0.00	0	0
chr20	64444167	7925	0.00	0	2
chr20_region	0	0	0.00	0	0
chr21	46709983	182652440	3.91	0	2967
chr21_region	392232	90651131	231.12	0	1330
chr22	50818468	44006	0.00	0	43
chr22_region	0	0	0.00	0	0
chrX	156040895	27768	0.00	0	9
chrX_region	0	0	0.00	0	0
chrY	57227415	3260	0.00	0	3
chrY_region	0	0	0.00	0	0
chr1_KI270706v1_random	175055	23852	0.14	0	69
chr1_KI270706v1_random_region	0	0	0.00	0	0
chr1_KI270707v1_random	32032	1682	0.05	0	4
chr1_KI270707v1_random_region	0	0	0.00	0	0
chr1_KI270710v1_random	40176	508	0.01	0	2
chr1_KI270710v1_random_region	0	0	0.00	0	0
chr3_GL000221v1_random	155397	36634	0.24	0	10
chr3_GL000221v1_random_region	0	0	0.00	0	0
chr4_GL000008v2_random	209709	7761	0.04	0	20
chr4_GL000008v2_random_region	0	0	0.00	0	0
chr9_KI270719v1_random	176845	46435	0.26	0	68
chr9_KI270719v1_random_region	0	0	0.00	0	0
chr14_GL000009v2_random	201709	44431	0.22	0	46
chr14_GL000009v2_random_region	0	0	0.00	0	0
chr14_KI270722v1_random	194050	857	0.00	0	1
chr14_KI270722v1_random_region	0	0	0.00	0	0
chr14_GL000194v1_random	191469	45908	0.24	0	40
chr14_GL000194v1_random_region	0	0	0.00	0	0
chr14_KI270725v1_random	172810	2497	0.01	0	8
chr14_KI270725v1_random_region	0	0	0.00	0	0
chr15_KI270727v1_random	448248	7023	0.02	0	28
chr15_KI270727v1_random_region	0	0	0.00	0	0
chr16_KI270728v1_random	1872759	111	0.00	0	1
chr16_KI270728v1_random_region	0	0	0.00	0	0
chr17_GL000205v2_random	185591	11410	0.06	0	11
chr17_GL000205v2_random_region	0	0	0.00	0	0
chr17_KI270729v1_random	280839	31	0.00	0	1
chr17_KI270729v1_random_region	0	0	0.00	0	0
chr22_KI270733v1_random	179772	765022	4.26	0	679
chr22_KI270733v1_random_region	0	0	0.00	0	0
chr22_KI270736v1_random	181920	325	0.00	0	2
chr22_KI270736v1_random_region	0	0	0.00	0	0
chrUn_KI270442v1	392061	167	0.00	0	1
chrUn_KI270442v1_region	0	0	0.00	0	0
chrUn_KI270435v1	92983	153	0.00	0	1
chrUn_KI270435v1_region	0	0	0.00	0	0
chrUn_KI270438v1	112505	201	0.00	0	1
chrUn_KI270438v1_region	0	0	0.00	0	0
chrUn_KI270519v1	138126	642	0.00	0	2
chrUn_KI270519v1_region	0	0	0.00	0	0
chrUn_KI270579v1	31033	1717	0.06	0	4
chrUn_KI270579v1_region	0	0	0.00	0	0
chrUn_KI270582v1	6504	1557	0.24	0	3
chrUn_KI270582v1_region	0	0	0.00	0	0
chrUn_GL000195v1	182896	126957	0.69	0	299
chrUn_GL000195v1_region	0	0	0.00	0	0
chrUn_GL000219v1	179198	297	0.00	0	1
chrUn_GL000219v1_region	0	0	0.00	0	0
chrUn_GL000220v1	161802	743990	4.60	0	645
chrUn_GL000220v1_region	0	0	0.00	0	0
chrUn_GL000224v1	179693	208	0.00	0	1
chrUn_GL000224v1_region	0	0	0.00	0	0
chrUn_GL000213v1	164239	126554	0.77	0	52
chrUn_GL000213v1_region	0	0	0.00	0	0
chrUn_KI270743v1	210658	1137	0.01	0	2
chrUn_KI270743v1_region	0	0	0.00	0	0
chrUn_KI270744v1	168472	1247	0.01	0	2
chrUn_KI270744v1_region	0	0	0.00	0	0
chrUn_KI270746v1	66486	163015	2.45	0	141
chrUn_KI270746v1_region	0	0	0.00	0	0
chrUn_KI270749v1	158759	769	0.00	0	2
chrUn_KI270749v1_region	0	0	0.00	0	0
chrUn_KI270750v1	148850	41408	0.28	0	52
chrUn_KI270750v1_region	0	0	0.00	0	0
chrUn_KI270751v1	150742	704	0.00	0	1
chrUn_KI270751v1_region	0	0	0.00	0	0
chrUn_KI270753v1	62944	629	0.01	0	2
chrUn_KI270753v1_region	0	0	0.00	0	0
chrUn_KI270754v1	40191	1096	0.03	0	2
chrUn_KI270754v1_region	0	0	0.00	0	0
chrUn_KI270755v1	36723	229	0.01	0	1
chrUn_KI270755v1_region	0	0	0.00	0	0
chrUn_KI270756v1	79590	68	0.00	0	1
chrUn_KI270756v1_region	0	0	0.00	0	0
chrUn_GL000214v1	137718	549	0.00	0	1
chrUn_GL000214v1_region	0	0	0.00	0	0
chrUn_KI270742v1	186739	45143	0.24	0	24
chrUn_KI270742v1_region	0	0	0.00	0	0
chrUn_GL000216v2	176608	234	0.00	0	1
chrUn_GL000216v2_region	0	0	0.00	0	0
chrUn_GL000218v1	161147	17573	0.11	0	25
chrUn_GL000218v1_region	0	0	0.00	0	0
chr1_GL383519v1_alt	110268	148	0.00	0	1
chr1_GL383519v1_alt_region	0	0	0.00	0	0
chr2_KI270768v1_alt	110099	684	0.01	0	3
chr2_KI270768v1_alt_region	0	0	0.00	0	0
chr2_GL383522v1_alt	123821	600	0.00	0	4
chr2_GL383522v1_alt_region	0	0	0.00	0	0
chr8_KI270810v1_alt	374415	276	0.00	0	2
chr8_KI270810v1_alt_region	0	0	0.00	0	0
chr9_GL383542v1_alt	60032	278	0.00	0	2
chr9_GL383542v1_alt_region	0	0	0.00	0	0
chr10_GL383546v1_alt	309802	150	0.00	0	1
chr10_GL383546v1_alt_region	0	0	0.00	0	0
chr13_KI270840v1_alt	191684	410	0.00	0	2
chr13_KI270840v1_alt_region	0	0	0.00	0	0
chr17_JH159146v1_alt	278131	300	0.00	0	2
chr17_JH159146v1_alt_region	0	0	0.00	0	0
chr21_GL383578v2_alt	63917	1908	0.03	0	4
chr21_GL383578v2_alt_region	0	0	0.00	0	0
chr21_KI270874v1_alt	166743	2085	0.01	0	6
chr21_KI270874v1_alt_region	0	0	0.00	0	0
chr21_KI270873v1_alt	143900	490	0.00	0	5
chr21_KI270873v1_alt_region	0	0	0.00	0	0
chr21_GL383579v2_alt	201197	107	0.00	0	1
chr21_GL383579v2_alt_region	0	0	0.00	0	0
chr21_GL383580v2_alt	74653	4244	0.06	0	18
chr21_GL383580v2_alt_region	0	0	0.00	0	0
chr21_GL383581v2_alt	116689	6934	0.06	0	18
chr21_GL383581v2_alt_region	0	0	0.00	0	0
chr21_KI270872v1_alt	82692	2918	0.04	0	8
chr21_KI270872v1_alt_region	0	0	0.00	0	0
chr6_GL000251v2_alt	4795265	271	0.00	0	1
chr6_GL000251v2_alt_region	0	0	0.00	0	0
chr15_KI270905v1_alt	5161414	62	0.00	0	1
chr15_KI270905v1_alt_region	0	0	0.00	0	0
chr4_KI270925v1_alt	555799	1659	0.00	0	9
chr4_KI270925v1_alt_region	0	0	0.00	0	0
chr6_GL000255v2_alt	4606388	421	0.00	0	1
chr6_GL000255v2_alt_region	0	0	0.00	0	0
chr6_GL000256v2_alt	4929269	176	0.00	0	2
chr6_GL000256v2_alt_region	0	0	0.00	0	0
chrUn_KN707660v1_decoy	8410	671	0.08	0	3
chrUn_KN707660v1_decoy_region	0	0	0.00	0	0
chrUn_KN707687v1_decoy	1136	600	0.53	0	4
chrUn_KN707687v1_decoy_region	0	0	0.00	0	0
chrUn_KN707716v1_decoy	2888	246	0.09	0	2
chrUn_KN707716v1_decoy_region	0	0	0.00	0	0
chrUn_KN707755v1_decoy	5343	300	0.06	0	2
chrUn_KN707755v1_decoy_region	0	0	0.00	0	0
chrUn_KN707784v1_decoy	3224	300	0.09	0	2
chrUn_KN707784v1_decoy_region	0	0	0.00	0	0
chrUn_KN707888v1_decoy	2424	290	0.12	0	1
chrUn_KN707888v1_decoy_region	0	0	0.00	0	0
chrUn_KN707889v1_decoy	1747	600	0.34	0	2
chrUn_KN707889v1_decoy_region	0	0	0.00	0	0
chrUn_KN707890v1_decoy	1088	300	0.28	0	2
chrUn_KN707890v1_decoy_region	0	0	0.00	0	0
chrUn_KN707891v1_decoy	1143	1596	1.40	0	10
chrUn_KN707891v1_decoy_region	0	0	0.00	0	0
chrUn_KN707892v1_decoy	2530	450	0.18	0	1
chrUn_KN707892v1_decoy_region	0	0	0.00	0	0
chrUn_KN707896v1_decoy	33125	13531	0.41	0	9
chrUn_KN707896v1_decoy_region	0	0	0.00	0	0
chrUn_KN707903v1_decoy	6581	300	0.05	0	2
chrUn_KN707903v1_decoy_region	0	0	0.00	0	0
chrUn_KN707934v1_decoy	1070	145	0.14	0	1
chrUn_KN707934v1_decoy_region	0	0	0.00	0	0
chrUn_KN707963v1_decoy	62955	190	0.00	0	2
chrUn_KN707963v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000008v1_decoy	9774	300	0.03	0	2
chrUn_JTFH01000008v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000031v1_decoy	5926	3416	0.58	0	16
chrUn_JTFH01000031v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000200v1_decoy	2632	600	0.23	0	4
chrUn_JTFH01000200v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000366v1_decoy	1914	262	0.14	0	2
chrUn_JTFH01000366v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000596v1_decoy	1402	273	0.19	0	1
chrUn_JTFH01000596v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000623v1_decoy	1363	300	0.22	0	1
chrUn_JTFH01000623v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000624v1_decoy	1360	300	0.22	0	2
chrUn_JTFH01000624v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000631v1_decoy	1344	300	0.22	0	2
chrUn_JTFH01000631v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000834v1_decoy	1110	300	0.27	0	2
chrUn_JTFH01000834v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000864v1_decoy	1083	3909	3.61	0	8
chrUn_JTFH01000864v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000872v1_decoy	1073	90	0.08	0	1
chrUn_JTFH01000872v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000920v1_decoy	1036	300	0.29	0	2
chrUn_JTFH01000920v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000927v1_decoy	1031	550	0.53	0	4
chrUn_JTFH01000927v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001405v1_decoy	1672	93	0.06	0	1
chrUn_JTFH01001405v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001459v1_decoy	1488	600	0.40	0	4
chrUn_JTFH01001459v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001549v1_decoy	1283	150	0.12	0	1
chrUn_JTFH01001549v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001581v1_decoy	1227	300	0.24	0	2
chrUn_JTFH01001581v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001632v1_decoy	1126	198	0.18	0	2
chrUn_JTFH01001632v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001680v1_decoy	1063	93	0.09	0	1
chrUn_JTFH01001680v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001705v1_decoy	1022	39	0.04	0	1
chrUn_JTFH01001705v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001724v1_decoy	1009	150	0.15	0	1
chrUn_JTFH01001724v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001768v1_decoy	6120	82	0.01	0	1
chrUn_JTFH01001768v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001772v1_decoy	5829	82	0.01	0	1
chrUn_JTFH01001772v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001776v1_decoy	5716	296	0.05	0	2
chrUn_JTFH01001776v1_decoy_region	0	0	0.00	0	0
total	3119043325	185712597	0.06	0	2967
total_region	392232	90651131	231.12	0	1330