File Info
- Filename
- custom_Sig_18_tumor_normal.tnseq.orientation_data.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/variant_calling/tnseq/custom_Sig_18_tumor_normal/custom_Sig_18_tumor_normal.tnseq.orientation_data.tsv
- Size
- 8.8 KB
- Workflow Run
- somacnv-bwcompat-20260608-203934
- Published
- Jun 08, 2026 1:44 PM
Content
View in new tab| #<METADATA>SAMPLE=Sig_18_tissue | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 7.1408e-06 | 3.39095e-06 | 3.72926e-06 | 0 | 3.9088e-05 | 5.09953e-05 | 2.57278e-06 | 0.998625 | 0.000140698 | 0.000848855 | 0.000278306 | 39882 | 4496 |
| AAC | GTT | 0 | 5.91631e-06 | 0.000283083 | 5.3618e-06 | 0 | 6.82831e-06 | 6.6923e-05 | 5.36006e-06 | 0.998159 | 0.00026626 | 0.000928492 | 0.000272596 | 18708 | 2465 |
| AAG | CTT | 0 | 3.81078e-06 | 3.62573e-05 | 3.6583e-06 | 0 | 5.05109e-05 | 4.78746e-05 | 3.67518e-06 | 0.998543 | 0.000166662 | 0.000740282 | 0.000404563 | 27436 | 4632 |
| AAT | ATT | 0 | 4.99674e-06 | 5.06213e-05 | 4.44163e-06 | 0 | 0.000126933 | 4.63344e-06 | 4.85677e-06 | 0.998839 | 0.000223809 | 0.000609793 | 0.00013084 | 23694 | 2791 |
| ACA | TGT | 0.00084909 | 0 | 3.78459e-06 | 6.76301e-05 | 0.00171826 | 0 | 3.80293e-06 | 4.99942e-05 | 0.995369 | 2.10937e-05 | 0.00161424 | 0.000303348 | 26701 | 9106 |
| ACC | GGT | 0.000173174 | 0 | 4.99857e-06 | 6.89846e-05 | 0.00109688 | 0 | 5.01195e-06 | 4.96355e-05 | 0.99702 | 0.000692221 | 0.000635347 | 0.000253567 | 20112 | 6529 |
| ACG | CGT | 0.00125076 | 0 | 1.17386e-05 | 0.000711391 | 0.00270398 | 0 | 1.17386e-05 | 9.69937e-05 | 0.98693 | 0.00207152 | 0.00423719 | 0.00197493 | 8662 | 4138 |
| ACT | AGT | 0.000750722 | 0 | 5.03587e-06 | 0.000119369 | 0.00103519 | 0 | 5.50485e-05 | 6.29245e-06 | 0.996424 | 0.000308792 | 0.000841498 | 0.000453697 | 20057 | 6275 |
| AGA | TCT | 7.99517e-05 | 6.22545e-05 | 0 | 0.000158774 | 0.00045276 | 3.71498e-06 | 0 | 0.000346299 | 0.997426 | 0.000112731 | 0.00098008 | 0.00037715 | 29429 | 7395 |
| AGC | GCT | 2.96017e-05 | 3.87329e-06 | 0 | 0.00217574 | 0.000151483 | 3.8075e-06 | 0 | 0.00118363 | 0.994698 | 2.11871e-05 | 0.00136397 | 0.000368914 | 26451 | 9844 |
| AGG | CCT | 4.53357e-06 | 2.57079e-05 | 0 | 0.000170746 | 9.46504e-05 | 4.35896e-05 | 0 | 0.000287379 | 0.998056 | 0.000309855 | 0.00064237 | 0.000364987 | 30411 | 9063 |
| AGT | ACT | 6.29245e-06 | 5.50485e-05 | 0 | 0.00103519 | 0.000119369 | 5.03587e-06 | 0 | 0.000750722 | 0.996424 | 0.000308792 | 0.000841498 | 0.000453697 | 20057 | 6275 |
| ATA | TAT | 5.78084e-06 | 6.88355e-06 | 0.000202182 | 0 | 6.45625e-06 | 0.000332353 | 1.41313e-05 | 0 | 0.99703 | 0.000361564 | 0.00186513 | 0.000175112 | 17702 | 2442 |
| ATC | GAT | 5.97243e-06 | 0.000170377 | 0.000102918 | 0 | 6.74007e-06 | 0.000533109 | 6.56935e-06 | 0 | 0.997299 | 2.7927e-05 | 0.00118919 | 0.00065835 | 16846 | 2478 |
| ATG | CAT | 4.40745e-06 | 8.78512e-05 | 4.38521e-05 | 0 | 4.54861e-06 | 0.000286134 | 5.26942e-05 | 0 | 0.996084 | 0.000232126 | 0.00214931 | 0.0010554 | 22834 | 3313 |
| ATT | AAT | 4.85677e-06 | 4.63344e-06 | 0.000126933 | 0 | 4.44163e-06 | 5.06213e-05 | 4.99674e-06 | 0 | 0.998839 | 0.000223809 | 0.000609793 | 0.00013084 | 23694 | 2791 |
| CAA | TTG | 0 | 1.20959e-05 | 5.29885e-05 | 4.44807e-06 | 0 | 1.42722e-05 | 5.13295e-06 | 4.45592e-06 | 0.998598 | 0.000254992 | 0.00064968 | 0.000403763 | 22537 | 3254 |
| CAC | GTG | 0 | 6.04548e-05 | 0.000186038 | 3.91696e-06 | 0 | 0.000175963 | 6.62158e-06 | 3.98565e-06 | 0.996029 | 0.000563079 | 0.00187774 | 0.00109307 | 25704 | 3850 |
| CAG | CTG | 0 | 2.82396e-06 | 3.35121e-05 | 2.61618e-06 | 0 | 3.15593e-06 | 3.21528e-05 | 2.63312e-06 | 0.997462 | 0.000598652 | 0.000976591 | 0.000886266 | 38475 | 7623 |
| CAT | ATG | 0 | 5.26942e-05 | 0.000286134 | 4.54861e-06 | 0 | 4.38521e-05 | 8.78512e-05 | 4.40745e-06 | 0.996084 | 0.000232126 | 0.00214931 | 0.0010554 | 22834 | 3313 |
| CCA | TGG | 0.00042964 | 0 | 3.30365e-06 | 1.10593e-05 | 0.000695936 | 0 | 3.29467e-06 | 3.5485e-06 | 0.997846 | 2.77386e-05 | 0.000813395 | 0.000165999 | 30722 | 9753 |
| CCC | GGG | 3.25241e-05 | 0 | 3.74012e-06 | 8.2401e-05 | 0.000260071 | 0 | 3.40844e-06 | 3.68057e-06 | 0.998096 | 0.000194542 | 0.000853105 | 0.000470054 | 29833 | 7526 |
| CCG | CGG | 0.000756546 | 0 | 5.68236e-05 | 0.000657934 | 0.00130023 | 0 | 1.18001e-05 | 1.36244e-05 | 0.989276 | 0.0027303 | 0.00324812 | 0.0019487 | 13395 | 5562 |
| CCT | AGG | 0.000287379 | 0 | 4.35896e-05 | 9.46504e-05 | 0.000170746 | 0 | 2.57079e-05 | 4.53357e-06 | 0.998056 | 0.000309855 | 0.00064237 | 0.000364987 | 30411 | 9063 |
| CGA | TCG | 0.000313503 | 1.40459e-05 | 0 | 0.00117387 | 0.00245287 | 1.39667e-05 | 0 | 0.000929435 | 0.989798 | 0.0028819 | 0.0012982 | 0.00112422 | 7204 | 3013 |
| CGC | GCG | 0.0011488 | 2.21048e-05 | 0 | 0.00450899 | 8.44498e-05 | 8.94387e-06 | 0 | 0.00222495 | 0.984071 | 0.00103118 | 0.00490668 | 0.00199261 | 11592 | 5571 |
| CGG | CCG | 1.36244e-05 | 1.18001e-05 | 0 | 0.00130023 | 0.000657934 | 5.68236e-05 | 0 | 0.000756546 | 0.989276 | 0.0027303 | 0.00324812 | 0.0019487 | 13395 | 5562 |
| CGT | ACG | 9.69937e-05 | 1.17386e-05 | 0 | 0.00270398 | 0.000711391 | 1.17386e-05 | 0 | 0.00125076 | 0.98693 | 0.00207152 | 0.00423719 | 0.00197493 | 8662 | 4138 |
| CTA | TAG | 8.21038e-06 | 8.88715e-06 | 2.96231e-05 | 0 | 7.95346e-06 | 0.00031259 | 8.46541e-06 | 0 | 0.997068 | 0.000327536 | 0.00198265 | 0.000246208 | 12590 | 2150 |
| CTC | GAG | 2.75821e-05 | 4.27018e-05 | 4.88152e-05 | 0 | 3.6168e-06 | 0.000244072 | 3.78506e-06 | 0 | 0.997778 | 1.85713e-05 | 0.00147663 | 0.000356272 | 27853 | 5236 |
| CTG | CAG | 2.63312e-06 | 3.21528e-05 | 3.15593e-06 | 0 | 2.61618e-06 | 3.35121e-05 | 2.82396e-06 | 0 | 0.997462 | 0.000598652 | 0.000976591 | 0.000886266 | 38475 | 7623 |
| CTT | AAG | 3.67518e-06 | 4.78746e-05 | 5.05109e-05 | 0 | 3.6583e-06 | 3.62573e-05 | 3.81078e-06 | 0 | 0.998543 | 0.000166662 | 0.000740282 | 0.000404563 | 27436 | 4632 |
| GAA | TTC | 0 | 3.93717e-06 | 2.43821e-05 | 3.71197e-06 | 0 | 5.10073e-06 | 5.0829e-06 | 3.74999e-06 | 0.999278 | 6.34203e-05 | 0.000497373 | 0.000114908 | 26977 | 3516 |
| GAC | GTC | 0 | 6.87451e-06 | 0.000110024 | 5.69905e-06 | 0 | 9.58974e-05 | 9.51943e-06 | 5.73163e-06 | 0.998093 | 7.30977e-05 | 0.00125344 | 0.000347123 | 17572 | 2616 |
| GAG | CTC | 0 | 3.78506e-06 | 0.000244072 | 3.6168e-06 | 0 | 4.88152e-05 | 4.27018e-05 | 2.75821e-05 | 0.997778 | 1.85713e-05 | 0.00147663 | 0.000356272 | 27853 | 5236 |
| GAT | ATC | 0 | 6.56935e-06 | 0.000533109 | 6.74007e-06 | 0 | 0.000102918 | 0.000170377 | 5.97243e-06 | 0.997299 | 2.7927e-05 | 0.00118919 | 0.00065835 | 16846 | 2478 |
| GCA | TGC | 0.00115176 | 0 | 3.90699e-06 | 9.32827e-05 | 0.00203596 | 0 | 3.85575e-06 | 4.72947e-05 | 0.995549 | 8.18501e-05 | 0.000725293 | 0.000307494 | 26341 | 10357 |
| GCC | GGC | 0.0007873 | 0 | 1.70921e-05 | 1.25965e-05 | 0.00175354 | 0 | 4.07931e-05 | 3.2765e-05 | 0.995749 | 5.23824e-05 | 0.0011521 | 0.000402816 | 27555 | 10150 |
| GCG | CGC | 0.00222495 | 0 | 8.94387e-06 | 8.44498e-05 | 0.00450899 | 0 | 2.21048e-05 | 0.0011488 | 0.984071 | 0.00103118 | 0.00490668 | 0.00199261 | 11592 | 5571 |
| GCT | AGC | 0.00118363 | 0 | 3.8075e-06 | 0.000151483 | 0.00217574 | 0 | 3.87329e-06 | 2.96017e-05 | 0.994698 | 2.11871e-05 | 0.00136397 | 0.000368914 | 26451 | 9844 |
| GGA | TCC | 4.05443e-06 | 3.764e-06 | 0 | 0.000163209 | 0.000140868 | 4.15977e-05 | 0 | 3.47111e-05 | 0.998309 | 0.00030065 | 0.000737781 | 0.000264472 | 26848 | 6309 |
| GGC | GCC | 3.2765e-05 | 4.07931e-05 | 0 | 0.00175354 | 1.25965e-05 | 1.70921e-05 | 0 | 0.0007873 | 0.995749 | 5.23824e-05 | 0.0011521 | 0.000402816 | 27555 | 10150 |
| GGG | CCC | 3.68057e-06 | 3.40844e-06 | 0 | 0.000260071 | 8.2401e-05 | 3.74012e-06 | 0 | 3.25241e-05 | 0.998096 | 0.000194542 | 0.000853105 | 0.000470054 | 29833 | 7526 |
| GGT | ACC | 4.96355e-05 | 5.01195e-06 | 0 | 0.00109688 | 6.89846e-05 | 4.99857e-06 | 0 | 0.000173174 | 0.99702 | 0.000692221 | 0.000635347 | 0.000253567 | 20112 | 6529 |
| GTA | TAC | 7.47944e-06 | 8.10806e-06 | 0.000161005 | 0 | 7.40961e-06 | 1.3929e-05 | 3.04426e-05 | 0 | 0.997367 | 1.45495e-05 | 0.0016444 | 0.000745442 | 13548 | 2172 |
| GTC | GAC | 5.73163e-06 | 9.51943e-06 | 9.58974e-05 | 0 | 5.69905e-06 | 0.000110024 | 6.87451e-06 | 0 | 0.998093 | 7.30977e-05 | 0.00125344 | 0.000347123 | 17572 | 2616 |
| GTG | CAC | 3.98565e-06 | 6.62158e-06 | 0.000175963 | 0 | 3.91696e-06 | 0.000186038 | 6.04548e-05 | 0 | 0.996029 | 0.000563079 | 0.00187774 | 0.00109307 | 25704 | 3850 |
| GTT | AAC | 5.36006e-06 | 6.6923e-05 | 6.82831e-06 | 0 | 5.3618e-06 | 0.000283083 | 5.91631e-06 | 0 | 0.998159 | 0.00026626 | 0.000928492 | 0.000272596 | 18708 | 2465 |
| TAA | TTA | 0 | 5.71448e-05 | 6.8017e-06 | 5.15632e-05 | 0 | 1.82155e-05 | 5.26641e-06 | 5.30262e-06 | 0.997704 | 0.00012809 | 0.00152722 | 0.000495949 | 20364 | 2593 |
| TAC | GTA | 0 | 3.04426e-05 | 1.3929e-05 | 7.40961e-06 | 0 | 0.000161005 | 8.10806e-06 | 7.47944e-06 | 0.997367 | 1.45495e-05 | 0.0016444 | 0.000745442 | 13548 | 2172 |
| TAG | CTA | 0 | 8.46541e-06 | 0.00031259 | 7.95346e-06 | 0 | 2.96231e-05 | 8.88715e-06 | 8.21038e-06 | 0.997068 | 0.000327536 | 0.00198265 | 0.000246208 | 12590 | 2150 |
| TAT | ATA | 0 | 1.41313e-05 | 0.000332353 | 6.45625e-06 | 0 | 0.000202182 | 6.88355e-06 | 5.78084e-06 | 0.99703 | 0.000361564 | 0.00186513 | 0.000175112 | 17702 | 2442 |
| TCA | TGA | 0.000327818 | 0 | 3.91822e-06 | 7.13462e-06 | 0.000890296 | 0 | 3.55611e-05 | 4.75159e-06 | 0.997723 | 0.000130073 | 0.000564527 | 0.000312632 | 25759 | 7364 |
| TCC | GGA | 3.47111e-05 | 0 | 4.15977e-05 | 0.000140868 | 0.000163209 | 0 | 3.764e-06 | 4.05443e-06 | 0.998309 | 0.00030065 | 0.000737781 | 0.000264472 | 26848 | 6309 |
| TCG | CGA | 0.000929435 | 0 | 1.39667e-05 | 0.00245287 | 0.00117387 | 0 | 1.40459e-05 | 0.000313503 | 0.989798 | 0.0028819 | 0.0012982 | 0.00112422 | 7204 | 3013 |
| TCT | AGA | 0.000346299 | 0 | 3.71498e-06 | 0.00045276 | 0.000158774 | 0 | 6.22545e-05 | 7.99517e-05 | 0.997426 | 0.000112731 | 0.00098008 | 0.00037715 | 29429 | 7395 |
| TGA | TCA | 4.75159e-06 | 3.55611e-05 | 0 | 0.000890296 | 7.13462e-06 | 3.91822e-06 | 0 | 0.000327818 | 0.997723 | 0.000130073 | 0.000564527 | 0.000312632 | 25759 | 7364 |
| TGC | GCA | 4.72947e-05 | 3.85575e-06 | 0 | 0.00203596 | 9.32827e-05 | 3.90699e-06 | 0 | 0.00115176 | 0.995549 | 8.18501e-05 | 0.000725293 | 0.000307494 | 26341 | 10357 |
| TGG | CCA | 3.5485e-06 | 3.29467e-06 | 0 | 0.000695936 | 1.10593e-05 | 3.30365e-06 | 0 | 0.00042964 | 0.997846 | 2.77386e-05 | 0.000813395 | 0.000165999 | 30722 | 9753 |
| TGT | ACA | 4.99942e-05 | 3.80293e-06 | 0 | 0.00171826 | 6.76301e-05 | 3.78459e-06 | 0 | 0.00084909 | 0.995369 | 2.10937e-05 | 0.00161424 | 0.000303348 | 26701 | 9106 |
| TTA | TAA | 5.30262e-06 | 5.26641e-06 | 1.82155e-05 | 0 | 5.15632e-05 | 6.8017e-06 | 5.71448e-05 | 0 | 0.997704 | 0.00012809 | 0.00152722 | 0.000495949 | 20364 | 2593 |
| TTC | GAA | 3.74999e-06 | 5.0829e-06 | 5.10073e-06 | 0 | 3.71197e-06 | 2.43821e-05 | 3.93717e-06 | 0 | 0.999278 | 6.34203e-05 | 0.000497373 | 0.000114908 | 26977 | 3516 |
| TTG | CAA | 4.45592e-06 | 5.13295e-06 | 1.42722e-05 | 0 | 4.44807e-06 | 5.29885e-05 | 1.20959e-05 | 0 | 0.998598 | 0.000254992 | 0.00064968 | 0.000403763 | 22537 | 3254 |
| TTT | AAA | 2.57278e-06 | 5.09953e-05 | 3.9088e-05 | 0 | 3.72926e-06 | 3.39095e-06 | 7.1408e-06 | 0 | 0.998625 | 0.000140698 | 0.000848855 | 0.000278306 | 39882 | 4496 |
66 rows