Sig_18_Blood.tnseq_tumor_only.filtered_snpEff.genes.txt

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Filename: Sig_18_Blood.tnseq_tumor_only.filtered_snpEff.genes.txt
Full Path: s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/variant_calling/chip_variants/Sig_18_Blood/somatic_normal/Sig_18_Blood.tnseq_tumor_only.filtered_snpEff.genes.txt
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Workflow Run: somacnv-bwcompat-20260608-203934
Published: Jun 08, 2026 1:45 PM
Content

# The following table is formatted as tab separated values. 
#GeneName	GeneId	TranscriptId	BioType	variants_impact_LOW	variants_impact_MODERATE	variants_impact_MODIFIER	variants_effect_3_prime_UTR_variant	variants_effect_5_prime_UTR_variant	variants_effect_conservative_inframe_deletion	variants_effect_conservative_inframe_insertion	variants_effect_disruptive_inframe_deletion	variants_effect_disruptive_inframe_insertion	variants_effect_downstream_gene_variant	variants_effect_intron_variant	variants_effect_missense_variant	variants_effect_non_coding_transcript_exon_variant	variants_effect_splice_region_variant	variants_effect_synonymous_variant	variants_effect_upstream_gene_variant
ABCG1	ENSG00000160179	ENST00000398437	protein_coding	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0
AGPAT3	ENSG00000160216	ENST00000291572	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
AIRE	ENSG00000160224	ENST00000291582	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
ATP5PO	ENSG00000241837	ENST00000290299	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
BACE2	ENSG00000182240	ENST00000330333	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
BAGE2	ENSG00000187172	ENST00000496773	transcribed_unprocessed_pseudogene	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2
BRWD1	ENSG00000185658	ENST00000333229	protein_coding	0	0	12	0	0	0	0	0	0	0	12	0	0	0	0	0
BRWD1-AS1	ENSG00000238141	ENST00000423274		0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	5
BRWD1-AS2	ENSG00000255568	ENST00000603064		0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	5
BRWD1-IT1	ENSG00000237373	ENST00000435608		0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
BTG3	ENSG00000154640	ENST00000339775	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
C21orf58	ENSG00000160298	ENST00000291691	protein_coding	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
C21orf62	ENSG00000205929	ENST00000382373	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
C21orf62-AS1	ENSG00000205930	ENST00000655231		0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
C2CD2	ENSG00000157617	ENST00000380486	protein_coding	0	0	7	0	0	0	0	0	0	0	7	0	0	0	0	0
CBR1	ENSG00000159228	ENST00000290349	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
CBS	ENSG00000160200	ENST00000352178	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
CBSL	ENSG00000274276	ENST00000624934	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
CCT8	ENSG00000156261	ENST00000286788	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
CFAP298	ENSG00000159079	ENST00000290155	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
CFAP298-TCP10L	ENSG00000265590	ENST00000673807	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
CFAP410	ENSG00000160226	ENST00000397956	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
CHODL	ENSG00000154645	ENST00000299295	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
CLIC6	ENSG00000159212	ENST00000360731	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
COL18A1	ENSG00000182871	ENST00000359759	protein_coding	0	1	6	0	0	0	0	1	0	0	6	0	0	0	0	0
COL18A1-AS2	ENSG00000224574	ENST00000446475		0	0	4	0	0	0	0	0	0	4	0	0	0	0	0	0
COL6A1	ENSG00000142156	ENST00000361866	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
CRYZL1	ENSG00000205758	ENST00000381554	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
DIP2A	ENSG00000160305	ENST00000651436	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
DONSON	ENSG00000159147	ENST00000303071	protein_coding	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
DOP1B	ENSG00000142197	ENST00000399151	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
DSCAM	ENSG00000171587	ENST00000400454	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
ENSG00000184441	ENSG00000184441	ENST00000448927		0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
ENSG00000223901	ENSG00000223901	ENST00000418029		0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
ENSG00000224790	ENSG00000224790	ENST00000653177		0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
ENSG00000228107	ENSG00000228107	ENST00000397184		0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	1
ENSG00000228137	ENSG00000228137	ENST00000444966		0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3
ENSG00000230212	ENSG00000230212	ENST00000535199		0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
ENSG00000241728	ENSG00000241728	ENST00000422357		0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
ENSG00000242553	ENSG00000242553	ENST00000440629		0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
ENSG00000249209	ENSG00000249209	ENST00000429238	protein_coding	0	0	6	0	0	0	0	0	0	0	6	0	0	0	0	0
ENSG00000249624	ENSG00000249624	ENST00000433395	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
ENSG00000273254	ENSG00000273254	ENST00000608809		0	0	3	0	0	0	0	0	0	3	0	0	0	0	0	0
ENSG00000273796	ENSG00000273796	ENST00000617004		0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	4
ENSG00000273840	ENSG00000273840	ENST00000612267		1	0	6	0	0	0	0	0	0	0	5	0	2	1	0	0
ENSG00000279690	ENSG00000279690	ENST00000624800	TEC	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
ENSG00000281420	ENSG00000281420	ENST00000626421	pseudogene	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	1
ENSG00000286018	ENSG00000286018	ENST00000651960		0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0
ENSG00000286153	ENSG00000286153	ENST00000651798		0	0	3	0	0	0	0	0	0	2	0	0	0	0	0	1
ENSG00000288711	ENSG00000288711	ENST00000684541	nonsense_mediated_decay	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
ENSG00000289001	ENSG00000289001	ENST00000692721		0	0	3	0	0	0	0	0	0	3	0	0	0	0	0	0
ENSG00000289421	ENSG00000289421	ENST00000689761		0	0	4	0	0	0	0	0	0	4	0	0	0	0	0	0
ERG	ENSG00000157554	ENST00000398919	protein_coding	0	0	4	0	0	0	0	0	0	1	2	0	0	0	0	1
ETS2	ENSG00000157557	ENST00000667466	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
EVA1C	ENSG00000166979	ENST00000300255	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
GABPA	ENSG00000154727	ENST00000354828	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
GART	ENSG00000159131	ENST00000381815	protein_coding	0	0	10	0	0	0	0	0	0	0	9	0	0	0	0	1
GET1-SH3BGR	ENSG00000285815	ENST00000647779	protein_coding	0	1	1	0	0	0	0	0	1	0	1	0	0	0	0	0
GRIK1	ENSG00000171189	ENST00000327783	protein_coding	0	0	4	0	0	0	0	0	0	0	4	0	0	0	0	0
HLCS	ENSG00000159267	ENST00000674895	protein_coding	0	0	4	0	0	0	0	0	0	1	3	0	0	0	0	0
HMGN1	ENSG00000205581	ENST00000380747	protein_coding	0	0	7	0	0	0	0	0	0	0	7	0	0	0	0	0
ICOSLG	ENSG00000160223	ENST00000400379	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
IFNAR2	ENSG00000159110	ENST00000342136	protein_coding	2	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0
IGSF5	ENSG00000183067	ENST00000380588	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
IL10RB	ENSG00000243646	ENST00000290200	protein_coding	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2
IL10RB-DT	ENSG00000223799	ENST00000411998		0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0
ITGB2	ENSG00000160255	ENST00000302347	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
ITSN1	ENSG00000205726	ENST00000381318	protein_coding	0	0	4	0	0	0	0	0	0	0	4	0	0	0	0	0
KRTAP10-1	ENSG00000215455	ENST00000400375	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
KRTAP10-2	ENSG00000205445	ENST00000391621	protein_coding	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0
KRTAP10-4	ENSG00000215454	ENST00000400374	protein_coding	0	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0
KRTAP10-5	ENSG00000241123	ENST00000400372	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
KRTAP10-6	ENSG00000188155	ENST00000400368	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
KRTAP12-2	ENSG00000221864	ENST00000360770	protein_coding	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0
KRTAP13-3	ENSG00000240432	ENST00000390690	protein_coding	0	3	1	0	0	0	0	0	0	0	0	3	0	0	0	1
KRTAP13-4	ENSG00000186971	ENST00000334068	protein_coding	0	1	3	0	0	0	0	0	0	0	0	1	0	0	0	3
LINC00334	ENSG00000182586	ENST00000670960		0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0
LINC01426	ENSG00000234380	ENST00000420877		0	0	6	0	0	0	0	0	0	6	0	0	0	0	0	0
LINC01547	ENSG00000183250	ENST00000667826		0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
LSS	ENSG00000160285	ENST00000356396	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
LTN1	ENSG00000198862	ENST00000614971	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
MCM3AP	ENSG00000160294	ENST00000291688	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
MCM3AP-AS1	ENSG00000215424	ENST00000664725		0	0	5	0	0	0	0	0	0	0	3	0	0	0	0	2
MIR6501	ENSG00000284448	ENST00000290239	miRNA	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0
MIS18A	ENSG00000159055	ENST00000290130	protein_coding	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0
MORC3	ENSG00000159256	ENST00000400485	protein_coding	0	0	5	0	0	0	0	0	0	0	5	0	0	0	0	0
MRPL39	ENSG00000154719	ENST00000307301	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
MX2	ENSG00000183486	ENST00000330714	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
NCAM2	ENSG00000154654	ENST00000400546	protein_coding	0	0	4	0	0	0	0	0	0	0	4	0	0	0	0	0
NDUFV3	ENSG00000160194	ENST00000354250	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
PAXBP1	ENSG00000159086	ENST00000331923	protein_coding	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0
PCNT	ENSG00000160299	ENST00000359568	protein_coding	0	1	4	0	0	0	0	0	1	0	4	0	0	0	0	0
PDE9A	ENSG00000160191	ENST00000291539	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
PDXK	ENSG00000160209	ENST00000291565	protein_coding	0	1	1	0	0	0	0	0	0	0	1	1	0	0	0	0
PFKL	ENSG00000141959	ENST00000349048	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
PKNOX1	ENSG00000160199	ENST00000291547	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
POFUT2	ENSG00000186866	ENST00000349485	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
PRDM15	ENSG00000141956	ENST00000269844	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
PRMT2	ENSG00000160310	ENST00000355680	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
PTTG1IP	ENSG00000183255	ENST00000330938	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
PWP2	ENSG00000241945	ENST00000291576	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
RCAN1	ENSG00000159200	ENST00000381135	protein_coding	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1
RIPPLY3	ENSG00000183145	ENST00000329553	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
RN7SL740P	ENSG00000244294	ENST00000467060	misc_RNA	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
RNU6-1149P	ENSG00000252619	ENST00000516810	snRNA	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
RNU6-992P	ENSG00000200213	ENST00000363343	snRNA	0	0	3	0	0	0	0	0	0	3	0	0	0	0	0	0
RRP1B	ENSG00000160208	ENST00000340648	protein_coding	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0
RUNX1	ENSG00000159216	ENST00000300305	protein_coding	0	0	17	6	5	0	0	0	0	0	3	0	0	0	0	3
RWDD2B	ENSG00000156253	ENST00000493196	protein_coding	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3
SAMSN1	ENSG00000155307	ENST00000647101	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
SCAF4	ENSG00000156304	ENST00000286835	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
SETD4	ENSG00000185917	ENST00000332131	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
SH3BGR	ENSG00000185437	ENST00000333634	protein_coding	0	1	1	0	0	0	0	0	1	0	1	0	0	0	0	0
SIM2	ENSG00000159263	ENST00000290399	protein_coding	0	1	1	0	0	0	0	0	0	0	1	1	0	0	0	0
SLC19A1	ENSG00000173638	ENST00000311124	protein_coding	0	1	5	0	0	1	0	0	0	5	0	0	0	0	0	0
SLX9	ENSG00000160256	ENST00000291634	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
SON	ENSG00000159140	ENST00000356577	protein_coding	1	1	1	0	0	0	0	1	0	0	0	0	0	0	1	1
SRSF9P1	ENSG00000214867	ENST00000399149	processed_pseudogene	0	0	3	0	0	0	0	0	0	3	0	0	0	0	0	0
SYNJ1	ENSG00000159082	ENST00000433931	protein_coding	0	1	3	0	0	0	1	0	0	0	3	0	0	0	0	0
TFF2	ENSG00000160181	ENST00000291526	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
TIAM1	ENSG00000156299	ENST00000286827	protein_coding	0	0	3	0	0	0	0	0	0	0	3	0	0	0	0	0
TIMM9P2	ENSG00000232608	ENST00000419324	processed_pseudogene	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
TMPRSS15	ENSG00000154646	ENST00000284885	protein_coding	0	0	6	0	0	0	0	0	0	0	6	0	0	0	0	0
TMPRSS2	ENSG00000184012	ENST00000679263	protein_coding	0	0	59	0	0	0	0	0	0	0	59	0	0	0	0	0
TPTE	ENSG00000274391	ENST00000618007	protein_coding	1	1	5	0	0	0	0	0	0	0	5	1	0	1	1	0
TRAPPC10	ENSG00000160218	ENST00000291574	protein_coding	0	1	3	0	0	0	0	0	0	0	3	1	0	0	0	0
TRPM2	ENSG00000142185	ENST00000397932	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
TSPEAR	ENSG00000175894	ENST00000323084	protein_coding	0	0	8	0	0	0	0	0	0	0	8	0	0	0	0	0
TSPEAR-AS1	ENSG00000235890	ENST00000451035		0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
TTC3	ENSG00000182670	ENST00000354749	protein_coding	0	0	5	0	0	0	0	0	0	0	5	0	0	0	0	0
TTC3-AS1	ENSG00000228677	ENST00000424733		0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3
UBASH3A	ENSG00000160185	ENST00000319294	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
UMODL1	ENSG00000177398	ENST00000408989	protein_coding	1	2	4	0	0	0	0	0	0	0	5	2	0	1	0	0
UMODL1-AS1	ENSG00000184385	ENST00000329015		0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	2
URB1	ENSG00000142207	ENST00000382751	protein_coding	0	0	3	0	1	0	0	0	0	0	2	0	0	0	0	0
URB1-AS1	ENSG00000256073	ENST00000534991		0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1
USP25	ENSG00000155313	ENST00000400183	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
VPS26C	ENSG00000157538	ENST00000309117	protein_coding	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
YBEY	ENSG00000182362	ENST00000329319	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
Y_RNA	ENSG00000252915	ENST00000517106	misc_RNA	0	0	7	0	0	0	0	0	0	7	0	0	0	0	0	0
ZBTB21	ENSG00000173276	ENST00000310826	protein_coding	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0