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HCC1395_tumor_vs_HCC1395_BL.qc.txt
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s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/variant_calling/hrd/TiH/HCC1395_tumor_vs_HCC1395_BL/FACETS/HCC1395_tumor_vs_HCC1395_BL.qc.txt
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Published
Jun 08, 2026 1:49 PM
sample	cval	dipLogR_flag	n_alternative_dipLogR	wgd	fga	n_dip_bal_segs	frac_dip_bal_segs	n_dip_imbal_segs	frac_dip_imbal_segs	n_amps	n_homdels	frac_homdels	n_homdels_clonal	frac_homdels_clonal	n_cn_states	n_segs	n_cnlr_clusters	n_lcn_na	n_loh	frac_loh	n_segs_subclonal	frac_segs_subclonal	n_segs_below_dipLogR	frac_below_dipLogR	n_segs_balanced_odd_tcn	frac_balanced_odd_tcn	n_segs_imbalanced_diploid_cn	frac_imbalanced_diploid_cn	n_segs_lcn_greater_mcn	frac_lcn_greater_mcn	n_snps	n_het_snps	frac_het_snps	n_snps_with_300x_in_tumor	n_het_snps_with_300x_in_tumor	n_het_snps_hom_in_tumor_1pct	n_het_snps_hom_in_tumor_5pct	frac_het_snps_hom_in_tumor_1pct	frac_het_snps_hom_in_tumor_5pct	mean_cnlr_residual	sd_cnlr_residual	n_segs_discordant_tcn	frac_discordant_tcn	n_segs_discordant_lcn	frac_discordant_lcn	n_segs_discordant_both	frac_discordant_both	n_segs_icn_cnlor_discordant	frac_icn_cnlor_discordant	mafr_median_all	mafr_median_clonal	mafr_n_gt_1
HCC1395_tumor_vs_HCC1395_BL	200	FALSE	0	TRUE	0.8	1	0.086	0	0	2	0	0	0	0	7	8	8	3	0	0	0	0	1	0.088	0	0	0	0	2	0.7	2512	219	0.087	1059	117	5	5	0.023	0.023	-0.021	0.63	1	0.089	3146635	0.089	1	0.089	2	0.68	0.038	0.036	1
HCC1395_tumor_vs_HCC1395_BL	50	FALSE	0	TRUE	0.8	1	0.086	0	0	2	1	0.039	0	0	8	9	9	3	1	0.039	1	0.039	1	0.039	0	0	0	0	2	0.7	2512	219	0.087	1059	117	5	5	0.023	0.023	-0.017	0.61	0	0	0	0	0	0	2	0.68	0.036	0.036	2