HCC1395_tumor_vs_HCC1395_BL.gene_level_purity.txt

File Info

Filename: HCC1395_tumor_vs_HCC1395_BL.gene_level_purity.txt
Full Path: s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/variant_calling/hrd/TiH/HCC1395_tumor_vs_HCC1395_BL/FACETS/HCC1395_tumor_vs_HCC1395_BL.gene_level_purity.txt
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Workflow Run: somacnv-bwcompat-20260608-203934
Published: Jun 08, 2026 1:49 PM
Content

sample	gene	chrom	gene_start	gene_end	tsg	seg	median_cnlr_seg	segclust	seg_start	seg_end	cf.em	tcn.em	lcn.em	cf	tcn	lcn	seg_length	mcn	genes_on_seg	gene_snps	gene_het_snps	spans_segs	cn_state	filter
HCC1395_tumor_vs_HCC1395_BL	ABCG1	21	42199689	42297244	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	18	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ADAMTS1	21	26835747	26845409	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	16	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ADAMTS5	21	26917912	26966513	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	15	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ADARB1	21	45073853	45226560	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	15	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	AGPAT3	21	43865186	43986536	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	9	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	AIRE	21	44285838	44298648	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	14	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	AP000275.2	21	32578822	32612281	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	10	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	AP000295.1	21	33229901	33297160	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	18	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	AP000311.1	21	33584687	33931607	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	64	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	APP	21	25880550	26171128	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	19	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ATP5PF	21	25716503	25735673	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	4	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ATP5PO	21	33903453	33915980	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	7	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	B3GALT5	21	39556442	39673137	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	5	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	BACE2	21	41167801	41282518	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	13	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	BACH1	21	29194071	29630751	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	22	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	BRWD1	21	39184176	39321559	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	51	5	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	BTG3	21	17593653	17612947	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	5	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	C21orf58	21	46300181	46323875	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	9	1	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	C21orf62	21	32793564	32813743	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	C21orf91	21	17788967	17819386	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	6	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	C2CD2	21	41885112	41953890	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	16	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CBR1	21	36069941	36073166	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	6	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CBR3	21	36134912	36146566	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	5	2	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CBS	21	43053191	43076943	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	1	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CCT8	21	29055805	29073797	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	16	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CFAP298	21	32592079	32612866	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	7	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CFAP410	21	44328944	44339402	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	9	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CHAF1B	21	36385378	36419015	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	14	1	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CHODL	21	17901263	18267373	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	8	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CLDN14	21	36460621	36576569	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	3	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CLDN17	21	30165564	30166756	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CLDN8	21	30214006	30216073	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CLIC6	21	34669389	34718227	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	11	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	COL18A1	21	45405137	45513720	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	53	7	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	COL6A1	21	45981737	46005050	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	34	5	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	COL6A2	21	46098097	46132849	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	33	4	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CRYAA	21	43169008	43172805	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	1	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CRYZL1	21	33589341	33643926	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	12	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CSTB	21	43772511	43776445	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	3	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CXADR	21	17512382	17593579	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	9	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	CYYR1	21	26466209	26573284	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	5	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DIP2A	21	46458899	46569852	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	40	3	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DNAJC28	21	33485530	33491720	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	5	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DNMT3L	21	44246339	44262216	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	7	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DONSON	21	33559542	33588708	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	19	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DOP1B	21	36156782	36294274	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	46	6	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DSCAM	21	40010999	40847139	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	43	2	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	DYRK1A	21	37365573	37526358	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	16	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ERG	21	38380027	38661780	FALSE	4	0.986382658370628	6	38380178	38383963	0.51523849076218	9	NA	0.51523849076218	9	NA	3785	NA	2	31	1	TRUE	INDETERMINATE	PASS
HCC1395_tumor_vs_HCC1395_BL	ETS2	21	38805307	38824955	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	13	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	EVA1C	21	32412006	32515397	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	10	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	FAM207A	21	44940010	44976989	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	6	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	FAM3B	21	41304212	41357431	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	8	2	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	FTCD	21	46136262	46155567	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	18	2	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	GABPA	21	25734570	25772460	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	11	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	GART	21	33503931	33543491	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	22	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	GRIK1	21	29536933	29940033	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	20	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	H2BFS	21	5972924	43565648	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1820	157	TRUE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	HLCS	21	36750888	36990236	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	15	1	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	HMGN1	21	39342315	39349647	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	5	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	HSF2BP	21	43529192	43659493	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	7	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	HSPA13	21	14371115	14383484	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	9	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	HUNK	21	31873315	32044633	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	14	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ICOSLG	21	44217014	44240966	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	13	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	IFNAR1	21	33324477	33359862	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	12	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	IFNAR2	21	33229901	33265675	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	11	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	IFNGR2	21	33402896	33479348	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	14	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	IGSF5	21	39745407	39802096	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	11	3	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	IL10RB	21	33266358	33310187	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	7	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ITGB2	21	44885953	44931989	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	16	2	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ITSN1	21	33642400	33899861	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	41	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	JAM2	21	25639272	25717562	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	10	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KCNE1	21	34446688	34512275	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KCNE2	21	34364024	34371389	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KCNJ15	21	38155549	38307357	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	5	1	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KCNJ6	21	37607376	38121345	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	10	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-1	21	44538981	44540195	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-10	21	44637356	44638455	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	3	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-11	21	44646414	44647650	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-12	21	44697172	44698044	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	3	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-2	21	44550357	44551505	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-3	21	44557790	44558760	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	3	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-4	21	44573724	44638284	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	30	3	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-5	21	44579455	44580604	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-6	21	44591268	44592505	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	5	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-7	21	44600597	44602174	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	5	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-8	21	44612079	44612954	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP10-9	21	44627123	44628293	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP11-1	21	30880644	30881555	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP12-1	21	44681576	44682163	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	2	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP12-2	21	44666189	44666927	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	2	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP12-3	21	44657932	44658341	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	2	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP12-4	21	44654213	44654659	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	2	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP13-1	21	30396074	30396822	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP13-2	21	30371391	30372257	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP13-3	21	30425265	30425968	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP13-4	21	30430230	30431026	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP15-1	21	30440275	30440945	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-1	21	30479699	30480344	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-2	21	30487057	30487436	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-3	21	30491464	30491985	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-4	21	30496824	30497133	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-5	21	30501657	30502117	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-6	21	30541535	30541864	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-7	21	30560875	30561314	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP19-8	21	31038159	31038476	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP20-1	21	30616425	30616699	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP20-2	21	30635236	30635619	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP20-4	21	30620627	30620850	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP21-1	21	30754830	30755428	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP21-2	21	30746794	30747233	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP21-3	21	30718525	30718777	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP22-1	21	30601087	30601382	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP22-2	21	30590105	30590397	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP24-1	21	30281309	30282958	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP25-1	21	30289145	30289514	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP26-1	21	30319124	30320316	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP27-1	21	30337013	30337694	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP6-1	21	30613431	30613930	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP6-2	21	30598590	30598902	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	1	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP6-3	21	30592440	30593075	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	KRTAP7-1	21	30829039	30829759	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	2	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	LCA5L	21	39405844	39445805	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	13	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	LIPI	21	14108813	14210891	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	11	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	LRRC3	21	44455486	44462196	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	LSS	21	46188141	46228824	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	22	3	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	LTN1	21	28928144	28992956	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	36	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MAP3K7CL	21	29077471	29175889	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	8	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MCM3AP	21	46235126	46286297	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	38	6	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MIS18A	21	32268219	32279069	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	6	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MORC3	21	36320189	36386148	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	21	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MRAP	21	32291813	32314784	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	5	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MRPL39	21	25585656	25607517	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	11	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MRPS6	21	34073224	34143034	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	11	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MX1	21	41420304	41459214	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	15	2	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	MX2	21	41361943	41409390	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	16	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	N6AMT1	21	28872191	28885371	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	6	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	NCAM2	21	20998315	21543329	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	23	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	NDUFV3	21	42879644	42913304	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	8	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	NRIP1	21	14961235	15065936	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	14	3	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	OLIG1	21	33070144	33072420	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	3	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	OLIG2	21	33025845	33029196	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	4	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PAXBP1	21	32733899	32771858	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	21	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PCBP3	21	45643694	45942454	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	15	3	TRUE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PCNT	21	46324122	46445769	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	63	6	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PCP4	21	39867317	39929397	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	3	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PDE9A	21	42653636	42775509	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	21	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PDXK	21	43719094	43762307	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	12	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PFKL	21	44300051	44327376	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	26	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PIGP	21	37059170	37073170	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	5	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PKNOX1	21	42974510	43033931	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	11	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	POFUT2	21	45263928	45287898	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	10	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	POTED	21	13609858	13641585	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	4	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PRDM15	21	41798225	41879482	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	36	6	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PRMT2	21	46635167	46665124	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	12	0	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PSMG1	21	39174769	39183851	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	7	4	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PTTG1IP	21	44849585	44873903	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	7	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	PWP2	21	44107290	44131181	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	1	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RBM11	21	14216130	14228372	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	6	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RCAN1	21	34513142	34615142	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	9	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RIPK4	21	41739369	41767106	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	14	6	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RIPPLY3	21	37006150	37019659	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	5	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RRP1	21	43789513	43805293	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	14	5	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RRP1B	21	43659548	43696079	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	18	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RSPH1	21	42472486	42496354	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	9	2	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	RUNX1	21	34787801	36004667	TRUE	2	1.61289419117046	8	34787873	35133391	0.51523849076218	14	NA	0.51523849076218	14	NA	345518	NA	2	50	3	TRUE	AMP	PASS
HCC1395_tumor_vs_HCC1395_BL	RWDD2B	21	29004384	29019378	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	7	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	S100B	21	46598962	46605208	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	2	1	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SAMSN1	21	14485228	14658821	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	17	3	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SCAF4	21	31671033	31732075	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	23	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SETD4	21	36034541	36079389	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	17	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SH3BGR	21	39445855	39515506	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	8	3	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SIM2	21	36699133	36749917	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	15	1	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SLC19A1	21	45493572	45544411	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	32	7	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SLC37A1	21	42496008	42581440	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	20	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SLC5A3	21	34073570	34106262	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	9	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SOD1	21	31659622	31668931	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	5	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SON	21	33542618	33577481	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	36	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SPATC1L	21	46161148	46184476	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	6	1	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SUMO3	21	44805617	44818779	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	5	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	SYNJ1	21	32628759	32728048	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	36	3	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TCP10L	21	32574841	32587373	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	5	3	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TFF1	21	42362282	42366594	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	3	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TFF2	21	42346357	42351128	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	4	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TFF3	21	42311667	42315651	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	3	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TIAM1	21	31118416	31559977	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	33	3	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TMEM50B	21	33432485	33480011	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	8	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TMPRSS15	21	18269116	18485879	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	25	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TMPRSS2	21	41464551	41531116	FALSE	6	1.45720743260971	7	41464469	41531104	0.51523849076218	13	7	0.51523849076218	13	7	66635	6	2	122	30	FALSE	AMP	PASS
HCC1395_tumor_vs_HCC1395_BL	TMPRSS3	21	42371837	42396846	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	13	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TPTE	21	10521553	10606140	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	21	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TRAPPC10	21	44012319	44106552	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	22	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TRPM2	21	44350163	44443081	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	37	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TSPEAR	21	44497892	44711580	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	70	5	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	TTC3	21	37073226	37203112	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	54	1	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	U2AF1	21	43092956	43107587	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	9	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	UBASH3A	21	42403447	42447681	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	16	4	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	UBE2G2	21	44768580	44802019	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	6	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	UMODL1	21	42062959	42143453	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	31	3	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	URB1	21	32311018	32393026	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	47	2	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	USP16	21	29024629	29054488	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	19	1	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	USP25	21	15730025	15880069	FALSE	1	-0.136059194411488	4	10413729	34782852	0.478722146438664	3	1	0.478722146438664	3	1	24369123	2	105	28	0	FALSE	LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	VPS26C	21	37223420	37267919	FALSE	3	-0.658726670773071	1	35220971	38367606	NA	2	NA	NA	2	NA	3146635	NA	18	8	0	FALSE	LOSS BEFORE or DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	WDR4	21	42843094	42879568	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	12	0	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	WRB	21	39377698	39428528	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	18	1	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	WRB-SH3BGR	21	39380332	39515506	FALSE	5	-0.445655755299061	2	38391067	41458590	1	2	1	1	2	1	3067523	1	18	26	4	FALSE	DOUBLE LOSS AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	YBEY	21	46286337	46297751	FALSE	8	0.175245234461013	5	45896326	46664314	0.51523849076218	4	1	0.51523849076218	4	1	767988	3	13	4	0	FALSE	CNLOH AFTER	PASS
HCC1395_tumor_vs_HCC1395_BL	ZBTB21	21	41986831	42010387	FALSE	7	-0.395243711827319	3	41740862	45850020	1	2	1	1	2	1	4109158	1	65	13	3	FALSE	DOUBLE LOSS AFTER	PASS