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Filename
custom_Sig_18_tumor_normal.gene_level.txt
Full Path
s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/variant_calling/hrd/TiH/custom_Sig_18_tumor_normal/FACETS/custom_Sig_18_tumor_normal.gene_level.txt
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34.1 KB
Workflow Run
somacnv-bwcompat-20260608-203934
Published
Jun 08, 2026 1:51 PM

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sample	gene	chrom	gene_start	gene_end	tsg	seg	median_cnlr_seg	segclust	seg_start	seg_end	cf.em	tcn.em	lcn.em	cf	tcn	lcn	seg_length	mcn	genes_on_seg	gene_snps	gene_het_snps	spans_segs	cn_state	filter
custom_Sig_18_tumor_normal	ABCG1	21	42199689	42297244	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	18	1	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	ADAMTS1	21	26835747	26845409	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	16	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ADAMTS5	21	26917912	26966513	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	15	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ADARB1	21	45073853	45226560	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	15	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	AGPAT3	21	43865186	43986536	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	9	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	AIRE	21	44285838	44298648	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	14	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	AP000275.2	21	32578822	32612281	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	10	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	AP000295.1	21	33229901	33297160	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	18	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	AP000311.1	21	33584687	33931607	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	64	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	APP	21	25880550	26171128	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	19	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ATP5PF	21	25716503	25735673	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	4	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ATP5PO	21	33903453	33915980	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	7	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	B3GALT5	21	39556442	39673137	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	BACE2	21	41167801	41282518	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	13	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	BACH1	21	29194071	29630751	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	22	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	BRWD1	21	39184176	39321559	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	51	4	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	BTG3	21	17593653	17612947	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	C21orf58	21	46300181	46323875	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	9	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	C21orf62	21	32793564	32813743	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	C21orf91	21	17788967	17819386	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	6	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	C2CD2	21	41885112	41953890	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	16	2	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	CBR1	21	36069941	36073166	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	6	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	CBR3	21	36134912	36146566	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	5	1	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	CCT8	21	29055805	29073797	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	16	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CFAP298	21	32592079	32612866	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	7	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CFAP410	21	44328944	44339402	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	9	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	CHAF1B	21	36385378	36419015	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	14	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	CHODL	21	17901263	18267373	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	8	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CLDN14	21	36460621	36576569	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	3	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	CLDN17	21	30165564	30166756	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CLDN8	21	30214006	30216073	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CLIC6	21	34669389	34718227	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	11	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	COL18A1	21	45405137	45513720	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	53	3	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	COL6A1	21	45981737	46005050	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	34	8	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	COL6A2	21	46098097	46132849	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	33	5	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	CRYZL1	21	33589341	33643926	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	12	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CSTB	21	43772511	43776445	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	3	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	CXADR	21	17512382	17593579	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	9	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	CYYR1	21	26466209	26573284	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	DIP2A	21	46458899	46569852	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	40	3	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	DNAJC28	21	33485530	33491720	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	DNMT3L	21	44246339	44262216	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	7	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	DONSON	21	33559542	33588708	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	19	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	DOP1B	21	36156782	36294274	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	46	1	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	DSCAM	21	40010999	40847139	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	44	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	DYRK1A	21	37365573	37526358	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	16	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	ERG	21	38380027	38661780	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	31	5	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ETS2	21	38805307	38824955	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	13	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	EVA1C	21	32412006	32515397	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	10	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	FAM207A	21	44940010	44976989	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	6	2	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	FAM3B	21	41304212	41357431	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	8	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	FTCD	21	46136262	46155567	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	18	2	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	GABPA	21	25734570	25772460	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	11	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	GART	21	33503931	33543491	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	22	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	GATD3A	21	44133605	44210114	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	5	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	GRIK1	21	29536933	29940033	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	20	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	H2BFS	21	5972924	43565648	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1814	159	TRUE	DIPLOID	PASS
custom_Sig_18_tumor_normal	HLCS	21	36750888	36990236	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	15	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	HMGN1	21	39342315	39349647	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	HSF2BP	21	43529192	43659493	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	7	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	HSPA13	21	14371115	14383484	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	9	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	HUNK	21	31873315	32044633	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	14	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ICOSLG	21	44217014	44240966	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	19	4	TRUE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	IFNAR1	21	33324477	33359862	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	12	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	IFNAR2	21	33229901	33265675	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	11	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	IFNGR2	21	33402896	33479348	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	14	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	IGSF5	21	39745407	39802096	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	11	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	IL10RB	21	33266358	33310187	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	7	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	ITGB2	21	44885953	44931989	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	16	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	ITSN1	21	33642400	33899861	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	41	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	JAM2	21	25639272	25717562	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	10	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KCNE1	21	34446688	34512275	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KCNE2	21	34364024	34371389	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KCNJ15	21	38155549	38307357	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	5	1	TRUE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	KCNJ6	21	37607376	38121345	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	10	2	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	KRTAP10-1	21	44538981	44540195	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-10	21	44637356	44638455	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	3	2	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-11	21	44646414	44647650	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-12	21	44697172	44698044	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	3	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-2	21	44550357	44551505	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-3	21	44557790	44558760	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	3	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-4	21	44573724	44638284	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	30	5	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-5	21	44579455	44580604	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-6	21	44591268	44592505	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	5	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-7	21	44600597	44602174	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	5	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-8	21	44612079	44612954	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP10-9	21	44627123	44628293	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP11-1	21	30880644	30881555	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP12-1	21	44681576	44682163	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	2	2	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP12-2	21	44666189	44666927	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	2	2	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP12-3	21	44657932	44658341	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	2	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP12-4	21	44654213	44654659	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	2	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	KRTAP13-1	21	30396074	30396822	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP13-2	21	30371391	30372257	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP13-3	21	30425265	30425968	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP13-4	21	30430230	30431026	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP15-1	21	30440275	30440945	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-1	21	30479699	30480344	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-2	21	30487057	30487436	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-3	21	30491464	30491985	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-4	21	30496824	30497133	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-5	21	30501657	30502117	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-6	21	30541535	30541864	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-7	21	30560875	30561314	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP19-8	21	31038159	31038476	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP20-1	21	30616425	30616699	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP20-2	21	30635236	30635619	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP20-3	21	30642864	30643136	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP20-4	21	30620627	30620850	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP21-1	21	30754830	30755428	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP21-2	21	30746794	30747233	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP21-3	21	30718525	30718777	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP22-1	21	30601087	30601382	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP22-2	21	30590105	30590397	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP23-1	21	30348399	30348609	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP24-1	21	30281309	30282958	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	4	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP25-1	21	30289145	30289514	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP26-1	21	30319124	30320316	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP27-1	21	30337013	30337694	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP6-1	21	30613431	30613930	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP6-2	21	30598590	30598902	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP6-3	21	30592440	30593075	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP7-1	21	30829039	30829759	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	2	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	KRTAP8-1	21	30812697	30813252	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	1	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	LCA5L	21	39405844	39445805	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	13	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	LIPI	21	14108813	14210891	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	11	3	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	LRRC3	21	44455486	44462196	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	LSS	21	46188141	46228824	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	22	2	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	LTN1	21	28928144	28992956	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	36	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MAP3K7CL	21	29077471	29175889	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	8	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MCM3AP	21	46235126	46286297	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	38	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	MIS18A	21	32268219	32279069	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	6	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MORC3	21	36320189	36386148	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	21	1	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	MRAP	21	32291813	32314784	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MRPL39	21	25585656	25607517	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	11	6	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MRPS6	21	34073224	34143034	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	11	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MX1	21	41420304	41459214	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	15	4	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	MX2	21	41361943	41409390	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	16	3	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	N6AMT1	21	28872191	28885371	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	NCAM2	21	20998315	21543329	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	23	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	NDUFV3	21	42879644	42913304	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	8	2	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	NRIP1	21	14961235	15065936	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	14	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	OLIG1	21	33070144	33072420	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	OLIG2	21	33025845	33029196	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	4	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	PAXBP1	21	32733899	32771858	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	21	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	PCBP3	21	45643694	45942454	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	15	3	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	PCNT	21	46324122	46445769	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	63	5	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	PCP4	21	39867317	39929397	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	3	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	PDE9A	21	42653636	42775509	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	21	2	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	PDXK	21	43719094	43762307	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	12	2	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	PFKL	21	44300051	44327376	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	26	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	PIGP	21	37059170	37073170	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	PKNOX1	21	42974510	43033931	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	11	1	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	POFUT2	21	45263928	45287898	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	10	1	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	PRDM15	21	41798225	41879482	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	36	4	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	PRMT2	21	46635167	46665124	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	12	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	PSMG1	21	39174769	39183851	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	7	4	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	PTTG1IP	21	44849585	44873903	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	7	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	PWP2	21	44107290	44131181	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	11	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	RBM11	21	14216130	14228372	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	6	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	RCAN1	21	34513142	34615142	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	9	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	RIPK4	21	41739369	41767106	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	14	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	RIPPLY3	21	37006150	37019659	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	5	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	RRP1	21	43789513	43805293	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	14	4	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	RRP1B	21	43659548	43696079	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	18	3	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	RSPH1	21	42472486	42496354	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	9	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	RUNX1	21	34787801	36004667	TRUE	2	1.80239871966853	6	34787813	35133447	0.3	22	NA	0.3	22	NA	345634	NA	2	50	3	TRUE	AMP	PASS
custom_Sig_18_tumor_normal	RWDD2B	21	29004384	29019378	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	7	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	S100B	21	46598962	46605208	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	2	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	SAMSN1	21	14485228	14658821	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	17	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	SCAF4	21	31671033	31732075	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	23	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	SETD4	21	36034541	36079389	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	17	1	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	SH3BGR	21	39445855	39515506	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	8	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	SIM2	21	36699133	36749917	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	15	1	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	SLC19A1	21	45493572	45544411	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	32	3	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	SLC37A1	21	42496008	42581440	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	20	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	SLC5A3	21	34073570	34106262	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	9	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	SOD1	21	31659622	31668931	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	SON	21	33542618	33577481	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	36	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	SPATC1L	21	46161148	46184476	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	6	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	SUMO3	21	44805617	44818779	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	5	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	SYNJ1	21	32628759	32728048	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	36	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	TCP10L	21	32574841	32587373	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	5	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	TFF1	21	42362282	42366594	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	3	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	TFF2	21	42346357	42351128	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	4	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	TFF3	21	42311667	42315651	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	3	1	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	TIAM1	21	31118416	31559977	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	33	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	TMEM50B	21	33432485	33480011	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	8	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	TMPRSS15	21	18269116	18485879	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	25	3	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	TMPRSS2	21	41464551	41531116	FALSE	5	1.58315417453107	5	41464462	41530957	0.813145982491622	8	4	0.813145982491622	8	4	66495	4	2	122	32	FALSE	INDETERMINATE	PASS
custom_Sig_18_tumor_normal	TMPRSS3	21	42371837	42396846	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	13	2	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	TPTE	21	10521553	10606140	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	21	5	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	TRAPPC10	21	44012319	44106552	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	22	3	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	TRPM2	21	44350163	44443081	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	37	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	TSPEAR	21	44497892	44711580	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	70	11	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	TTC3	21	37073226	37203112	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	54	5	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	U2AF1	21	43092956	43107587	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	9	0	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	UBASH3A	21	42403447	42447681	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	16	1	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	UBE2G2	21	44768580	44802019	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	6	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	UMODL1	21	42062959	42143453	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	31	5	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	URB1	21	32311018	32393026	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	47	5	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	USP16	21	29024629	29054488	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	19	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	USP25	21	15730025	15880069	FALSE	1	-0.187937031711413	4	10413729	34782905	1	2	1	1	2	1	24369176	1	105	28	1	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	VPS26C	21	37223420	37267919	FALSE	3	-0.270584720031113	3	35220985	38299281	0.3	2	NA	0.3	2	NA	3078296	NA	18	8	0	FALSE	DIPLOID or CNLOH	PASS
custom_Sig_18_tumor_normal	WDR4	21	42843094	42879568	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	12	3	FALSE	HOMDEL	suppress_large_homdel
custom_Sig_18_tumor_normal	WRB	21	39377698	39428528	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	18	0	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	WRB-SH3BGR	21	39380332	39515506	FALSE	4	-0.226753436874285	4	38299554	41458714	1	2	1	1	2	1	3159160	1	19	26	2	FALSE	DIPLOID	PASS
custom_Sig_18_tumor_normal	YBEY	21	46286337	46297751	FALSE	8	-0.31232086086799	2	44231428	46664292	0.127197693195776	1	0	0.127197693195776	1	0	2432864	1	46	4	0	FALSE	HETLOSS	PASS
custom_Sig_18_tumor_normal	ZBTB21	21	41986831	42010387	FALSE	6	-0.3995708135494	1	41740854	44226127	0.127197693195776	0	0	0.127197693195776	0	0	2485273	0	32	13	3	FALSE	HOMDEL	suppress_large_homdel