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- custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.genes.txt
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- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/reports/raw_qc/snpeff/strelka/custom_Sig_18_tumor_normal/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.genes.txt
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- Workflow Run
- somacnv-bwcompat-20260608-203934
- Published
- Jun 08, 2026 1:53 PM
Content
View in new tab# The following table is formatted as tab separated values. #GeneName GeneId TranscriptId BioType variants_impact_HIGH variants_impact_LOW variants_impact_MODERATE variants_impact_MODIFIER variants_effect_3_prime_UTR_variant variants_effect_5_prime_UTR_premature_start_codon_gain_variant variants_effect_5_prime_UTR_variant variants_effect_downstream_gene_variant variants_effect_intron_variant variants_effect_missense_variant variants_effect_non_coding_transcript_exon_variant variants_effect_splice_region_variant variants_effect_stop_gained variants_effect_synonymous_variant variants_effect_upstream_gene_variant ADARB1 ENSG00000197381 ENST00000360697 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 AIRE ENSG00000160224 ENST00000291582 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 APP ENSG00000142192 ENST00000346798 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 ATP5PF ENSG00000154723 ENST00000400099 protein_coding 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 BACE2 ENSG00000182240 ENST00000330333 protein_coding 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 BACE2-IT1 ENSG00000224388 ENST00000433378 0 0 0 3 0 0 0 0 0 0 0 0 0 0 3 BRWD1 ENSG00000185658 ENST00000333229 protein_coding 0 0 0 7 0 0 0 3 4 0 0 0 0 0 0 BRWD1-AS1 ENSG00000238141 ENST00000423274 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 BRWD1-AS2 ENSG00000255568 ENST00000603064 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 BRWD1-IT1 ENSG00000237373 ENST00000435608 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 C21orf58 ENSG00000160298 ENST00000291691 protein_coding 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 C2CD2 ENSG00000157617 ENST00000380486 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 CBR1 ENSG00000159228 ENST00000290349 protein_coding 0 0 1 4 0 0 0 0 4 1 0 0 0 0 0 CBR3 ENSG00000159231 ENST00000290354 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 CBR3-AS1 ENSG00000236830 ENST00000432988 retained_intron 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 CBSL ENSG00000274276 ENST00000624934 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 CFAP298 ENSG00000159079 ENST00000290155 protein_coding 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 CFAP298-TCP10L ENSG00000265590 ENST00000673807 protein_coding 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 CFAP410 ENSG00000160226 ENST00000397956 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 CHAF1B ENSG00000159259 ENST00000314103 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 CHODL ENSG00000154645 ENST00000299295 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 CLDN14 ENSG00000159261 ENST00000342108 protein_coding 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 CLIC6 ENSG00000159212 ENST00000360731 protein_coding 0 2 4 2 0 0 0 0 2 4 0 0 0 2 0 COL18A1 ENSG00000182871 ENST00000359759 protein_coding 0 0 0 4 0 0 0 1 2 0 0 0 0 0 1 COL6A1 ENSG00000142156 ENST00000361866 protein_coding 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 COL6A2 ENSG00000142173 ENST00000300527 protein_coding 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 CSTB ENSG00000160213 ENST00000291568 protein_coding 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 CYYR1 ENSG00000166265 ENST00000652641 protein_coding 0 0 0 3 0 0 1 0 1 0 0 0 0 0 1 CYYR1-AS1 ENSG00000197934 ENST00000357401 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 DNMT3L ENSG00000142182 ENST00000270172 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 DONSON ENSG00000159147 ENST00000303071 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 DOP1B ENSG00000142197 ENST00000399151 protein_coding 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 DSCAM ENSG00000171587 ENST00000400454 protein_coding 0 0 2 3 0 0 0 0 3 2 0 0 0 0 0 DYRK1A ENSG00000157540 ENST00000398960 protein_coding 0 1 0 1 0 0 0 0 2 0 0 1 0 0 0 ENSG00000184441 ENSG00000184441 ENST00000448927 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 ENSG00000224790 ENSG00000224790 ENST00000653177 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000227757 ENSG00000227757 ENST00000454622 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 ENSG00000228137 ENSG00000228137 ENST00000444966 0 0 0 3 0 0 0 0 0 0 0 0 0 0 3 ENSG00000228318 ENSG00000228318 ENST00000411427 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 ENSG00000229047 ENSG00000229047 ENST00000446301 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 ENSG00000230212 ENSG00000230212 ENST00000535199 0 0 0 5 0 0 0 0 5 0 0 0 0 0 0 ENSG00000230479 ENSG00000230479 ENST00000429588 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 ENSG00000231201 ENSG00000231201 ENST00000436429 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000232969 ENSG00000232969 ENST00000426029 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 ENSG00000233818 ENSG00000233818 ENST00000428667 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 ENSG00000235609 ENSG00000235609 ENST00000432230 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 ENSG00000249209 ENSG00000249209 ENST00000429238 protein_coding 0 0 0 4 0 0 0 1 3 0 0 0 0 0 0 ENSG00000249624 ENSG00000249624 ENST00000433395 protein_coding 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 ENSG00000260583 ENSG00000260583 ENST00000567517 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000272991 ENSG00000272991 ENST00000608767 0 0 0 3 0 0 0 0 0 0 0 0 0 0 3 ENSG00000273840 ENSG00000273840 ENST00000612267 0 0 0 5 0 0 0 0 5 0 0 0 0 0 0 ENSG00000286224 ENSG00000286224 ENST00000652508 protein_coding 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000287507 ENSG00000287507 ENST00000660472 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 ENSG00000289001 ENSG00000289001 ENST00000692721 0 0 0 5 0 0 0 5 0 0 0 0 0 0 0 ENSG00000289404 ENSG00000289404 ENST00000692770 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ERG ENSG00000157554 ENST00000398919 protein_coding 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 ETS2 ENSG00000157557 ENST00000667466 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 FTCD ENSG00000160282 ENST00000397748 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 GABPA ENSG00000154727 ENST00000354828 protein_coding 0 0 0 3 0 0 1 0 2 0 0 0 0 0 0 GART ENSG00000159131 ENST00000381815 protein_coding 0 1 0 3 0 0 0 0 2 0 0 1 0 0 2 GET1-SH3BGR ENSG00000285815 ENST00000647779 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 GRIK1 ENSG00000171189 ENST00000327783 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 HLCS ENSG00000159267 ENST00000674895 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 HSPA13 ENSG00000155304 ENST00000285667 protein_coding 0 1 1 1 0 0 0 0 1 1 0 0 0 1 0 HUNK ENSG00000142149 ENST00000270112 protein_coding 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 ICOSLG ENSG00000160223 ENST00000400379 protein_coding 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 IFNAR2 ENSG00000159110 ENST00000342136 protein_coding 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 IL10RB ENSG00000243646 ENST00000290200 protein_coding 0 0 0 4 0 0 0 0 1 0 0 0 0 0 3 IL10RB-DT ENSG00000223799 ENST00000411998 0 0 0 3 0 0 0 3 0 0 0 0 0 0 0 ITGB2 ENSG00000160255 ENST00000302347 protein_coding 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 ITSN1 ENSG00000205726 ENST00000381318 protein_coding 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 KRTAP10-1 ENSG00000215455 ENST00000400375 protein_coding 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 KRTAP10-10 ENSG00000221859 ENST00000380095 protein_coding 0 1 3 0 0 0 0 0 0 3 0 0 0 1 0 KRTAP10-11 ENSG00000243489 ENST00000334670 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 KRTAP10-2 ENSG00000205445 ENST00000391621 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 KRTAP10-4 ENSG00000215454 ENST00000400374 protein_coding 0 1 2 0 0 0 0 0 0 2 0 0 0 1 0 KRTAP10-5 ENSG00000241123 ENST00000400372 protein_coding 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 KRTAP10-6 ENSG00000188155 ENST00000400368 protein_coding 0 4 4 0 0 0 0 0 0 4 0 0 0 4 0 KRTAP10-7 ENSG00000272804 ENST00000609664 protein_coding 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 KRTAP12-2 ENSG00000221864 ENST00000360770 protein_coding 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 LCA5L ENSG00000157578 ENST00000288350 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 LLPHP2 ENSG00000235514 ENST00000436405 processed_pseudogene 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 LSS ENSG00000160285 ENST00000356396 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 LTN1 ENSG00000198862 ENST00000614971 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 MCM3AP ENSG00000160294 ENST00000291688 protein_coding 0 1 2 5 0 0 0 0 5 2 0 1 0 1 0 MCM3AP-AS1 ENSG00000215424 ENST00000664725 0 0 0 6 0 0 0 0 5 0 1 0 0 0 0 MIR6501 ENSG00000284448 ENST00000290239 miRNA 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 MIR6815 ENSG00000275167 ENST00000611994 miRNA 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 MIS18A ENSG00000159055 ENST00000290130 protein_coding 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 MORC3 ENSG00000159256 ENST00000400485 protein_coding 0 2 0 2 0 0 0 0 4 0 0 2 0 0 0 MRAP ENSG00000170262 ENST00000303645 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 MRPL39 ENSG00000154719 ENST00000307301 protein_coding 0 2 1 1 0 0 0 0 1 1 0 1 0 2 0 MX1 ENSG00000157601 ENST00000398598 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 MX2 ENSG00000183486 ENST00000330714 protein_coding 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 NCAM2 ENSG00000154654 ENST00000400546 protein_coding 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 NDUFV3 ENSG00000160194 ENST00000354250 protein_coding 0 0 1 3 2 0 0 0 1 1 0 0 0 0 0 NRIP1 ENSG00000180530 ENST00000318948 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 OLIG1 ENSG00000184221 ENST00000382348 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 PCNT ENSG00000160299 ENST00000359568 protein_coding 0 2 2 2 0 0 0 0 2 2 0 0 0 2 0 PDE9A ENSG00000160191 ENST00000291539 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 PDXK ENSG00000160209 ENST00000291565 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 PFKL ENSG00000141959 ENST00000349048 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 PKNOX1 ENSG00000160199 ENST00000291547 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 PLAC4 ENSG00000280109 ENST00000645185 0 0 0 3 0 0 0 0 0 0 3 0 0 0 0 PRDM15 ENSG00000141956 ENST00000269844 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 PRMT2 ENSG00000160310 ENST00000355680 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 PSMG1 ENSG00000183527 ENST00000331573 protein_coding 0 2 1 1 0 0 0 0 3 1 0 2 0 0 0 RIPPLY3 ENSG00000183145 ENST00000329553 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 RNU6-992P ENSG00000200213 ENST00000363343 snRNA 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 RPL3P1 ENSG00000228149 ENST00000437106 processed_pseudogene 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 RRP1 ENSG00000160214 ENST00000497547 protein_coding 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 RRP1B ENSG00000160208 ENST00000340648 protein_coding 0 0 2 1 0 0 0 0 1 2 0 0 0 0 0 RSPH1 ENSG00000160188 ENST00000291536 protein_coding 0 1 0 2 0 0 0 0 3 0 0 1 0 0 0 RUNX1 ENSG00000159216 ENST00000300305 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 SCAF4 ENSG00000156304 ENST00000286835 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 SLC19A1 ENSG00000173638 ENST00000311124 protein_coding 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 SLC37A1 ENSG00000160190 ENST00000352133 protein_coding 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 SLX9 ENSG00000160256 ENST00000291634 protein_coding 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 SNORA80A ENSG00000200792 ENST00000363922 snoRNA 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 SNRPGP13 ENSG00000231480 ENST00000442212 processed_pseudogene 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 SON ENSG00000159140 ENST00000356577 protein_coding 0 0 2 3 0 0 0 1 0 2 0 0 0 0 2 SYNJ1 ENSG00000159082 ENST00000433931 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 TCP10L ENSG00000242220 ENST00000300258 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 TIAM1 ENSG00000156299 ENST00000286827 protein_coding 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 TMPRSS15 ENSG00000154646 ENST00000284885 protein_coding 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 TMPRSS2 ENSG00000184012 ENST00000679263 protein_coding 0 1 1 10 0 0 0 0 10 1 0 0 0 1 0 TMPRSS3 ENSG00000160183 ENST00000433957 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 TPTE ENSG00000274391 ENST00000618007 protein_coding 0 0 0 5 0 0 0 0 5 0 0 0 0 0 0 TRPM2 ENSG00000142185 ENST00000397932 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 TSPEAR ENSG00000175894 ENST00000323084 protein_coding 0 0 0 23 0 0 0 0 23 0 0 0 0 0 0 TTC3 ENSG00000182670 ENST00000354749 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 TTC3-AS1 ENSG00000228677 ENST00000424733 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 UBE2G2 ENSG00000184787 ENST00000345496 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 UMODL1 ENSG00000177398 ENST00000408989 protein_coding 0 1 3 2 1 0 0 0 2 3 0 1 0 0 0 UMODL1-AS1 ENSG00000184385 ENST00000329015 0 0 0 3 0 0 0 0 0 0 0 0 0 0 3 URB1 ENSG00000142207 ENST00000382751 protein_coding 0 1 0 2 0 0 0 0 2 0 0 0 0 1 0 USP16 ENSG00000156256 ENST00000334352 protein_coding 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 USP25 ENSG00000155313 ENST00000400183 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 WDR4 ENSG00000160193 ENST00000330317 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 YBEY ENSG00000182362 ENST00000329319 protein_coding 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1