File Info
- Filename
- custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.genes.txt
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- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/bwcompat/somacnv_bwcompat_20260608-203934/reports/raw_qc/snpeff/strelka/custom_Sig_18_tumor_normal/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.genes.txt
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- Workflow Run
- somacnv-bwcompat-20260608-203934
- Published
- Jun 08, 2026 1:53 PM
Content
View in new tab# The following table is formatted as tab separated values. #GeneName GeneId TranscriptId BioType variants_impact_HIGH variants_impact_LOW variants_impact_MODERATE variants_impact_MODIFIER variants_effect_3_prime_UTR_variant variants_effect_5_prime_UTR_variant variants_effect_conservative_inframe_deletion variants_effect_disruptive_inframe_deletion variants_effect_disruptive_inframe_insertion variants_effect_downstream_gene_variant variants_effect_frameshift_variant variants_effect_intron_variant variants_effect_non_coding_transcript_exon_variant variants_effect_splice_region_variant variants_effect_upstream_gene_variant AGPAT3 ENSG00000160216 ENST00000291572 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 APP ENSG00000142192 ENST00000346798 protein_coding 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 BACE2 ENSG00000182240 ENST00000330333 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 BACE2-IT1 ENSG00000224388 ENST00000433378 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 C21orf91 ENSG00000154642 ENST00000284881 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 C21orf91-OT1 ENSG00000240770 ENST00000430815 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 CBR3 ENSG00000159231 ENST00000290354 protein_coding 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 CBR3-AS1 ENSG00000236830 ENST00000432988 retained_intron 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 CCT8 ENSG00000156261 ENST00000286788 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 CFAP410 ENSG00000160226 ENST00000397956 protein_coding 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 CHAF1B ENSG00000159259 ENST00000314103 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 COL18A1 ENSG00000182871 ENST00000359759 protein_coding 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 COL6A1 ENSG00000142156 ENST00000361866 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 CRYZL1 ENSG00000205758 ENST00000381554 protein_coding 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 DONSON ENSG00000159147 ENST00000303071 protein_coding 0 0 0 4 0 0 0 0 0 2 0 2 0 0 0 DOP1B ENSG00000142197 ENST00000399151 protein_coding 0 0 1 2 0 0 0 1 0 0 0 2 0 0 0 DSCAM ENSG00000171587 ENST00000400454 protein_coding 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 ENSG00000184441 ENSG00000184441 ENST00000448927 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 ENSG00000227698 ENSG00000227698 ENST00000432411 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000241728 ENSG00000241728 ENST00000422357 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000244676 ENSG00000244676 ENST00000428689 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 ENSG00000249209 ENSG00000249209 ENST00000429238 protein_coding 0 0 0 4 0 0 0 0 0 1 0 3 0 0 0 ENSG00000251778 ENSG00000251778 ENST00000515969 snoRNA 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ENSG00000273840 ENSG00000273840 ENST00000612267 0 1 0 2 0 0 0 0 0 0 0 3 0 1 0 ENSG00000286549 ENSG00000286549 ENST00000668861 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 ERG ENSG00000157554 ENST00000398919 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 FTCD ENSG00000160282 ENST00000397748 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 FTCD-AS1 ENSG00000237338 ENST00000446649 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 GABPA ENSG00000154727 ENST00000354828 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 GART ENSG00000159131 ENST00000381815 protein_coding 0 0 0 2 0 0 0 0 0 0 0 1 0 0 1 GET1-SH3BGR ENSG00000285815 ENST00000647779 protein_coding 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 HMGN1P2 ENSG00000229046 ENST00000445197 processed_pseudogene 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 HSPD1P7 ENSG00000215005 ENST00000447985 processed_pseudogene 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 HUNK ENSG00000142149 ENST00000270112 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 IFNGR2 ENSG00000159128 ENST00000381995 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 IGSF5 ENSG00000183067 ENST00000380588 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 ITSN1 ENSG00000205726 ENST00000381318 protein_coding 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 JAM2 ENSG00000154721 ENST00000400532 protein_coding 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 KRTAP19-3 ENSG00000244025 ENST00000334063 protein_coding 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 KRTAP19-4 ENSG00000186967 ENST00000334058 protein_coding 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 KRTAP19-5 ENSG00000186977 ENST00000334151 protein_coding 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 KRTAP25-1 ENSG00000232263 ENST00000416044 protein_coding 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LINC01426 ENSG00000234380 ENST00000420877 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 LIPI ENSG00000188992 ENST00000681601 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 LTN1 ENSG00000198862 ENST00000614971 protein_coding 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 MIR6815 ENSG00000275167 ENST00000611994 miRNA 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 MORC3 ENSG00000159256 ENST00000400485 protein_coding 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 MX2 ENSG00000183486 ENST00000330714 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 N6AMT1 ENSG00000156239 ENST00000303775 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 NCAM2 ENSG00000154654 ENST00000400546 protein_coding 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 NDUFV3 ENSG00000160194 ENST00000354250 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 PCNT ENSG00000160299 ENST00000359568 protein_coding 1 0 0 2 0 0 0 0 0 0 1 2 0 0 0 PFKL ENSG00000141959 ENST00000349048 protein_coding 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 PLAC4 ENSG00000280109 ENST00000645185 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 PRDM15 ENSG00000141956 ENST00000269844 protein_coding 0 0 0 3 0 1 0 0 0 0 0 2 0 0 0 PRMT2 ENSG00000160310 ENST00000355680 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 RIMKLBP1 ENSG00000189089 ENST00000408914 processed_pseudogene 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 RNGTTP1 ENSG00000237731 ENST00000420965 processed_pseudogene 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 RRP1 ENSG00000160214 ENST00000497547 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 RUNX1 ENSG00000159216 ENST00000300305 protein_coding 0 0 0 2 1 0 0 0 0 0 0 0 0 0 1 SAMSN1 ENSG00000155307 ENST00000647101 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 SCAF4 ENSG00000156304 ENST00000286835 protein_coding 0 0 0 3 0 0 0 0 0 0 0 3 0 0 0 SETD4 ENSG00000185917 ENST00000332131 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 SH3BGR ENSG00000185437 ENST00000333634 protein_coding 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 SON ENSG00000159140 ENST00000356577 protein_coding 0 2 0 2 0 0 0 0 0 1 0 2 0 2 1 SPATC1L ENSG00000160284 ENST00000291672 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 SYNJ1 ENSG00000159082 ENST00000433931 protein_coding 0 1 0 2 0 0 0 0 0 0 0 3 0 1 0 TIAM1 ENSG00000156299 ENST00000286827 protein_coding 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 TMPRSS15 ENSG00000154646 ENST00000284885 protein_coding 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 TMPRSS2 ENSG00000184012 ENST00000679263 protein_coding 0 0 0 5 0 0 0 0 0 0 0 5 0 0 0 TPTE ENSG00000274391 ENST00000618007 protein_coding 0 1 0 2 0 0 0 0 0 0 0 3 0 1 0 TRAPPC10 ENSG00000160218 ENST00000291574 protein_coding 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 TTC3 ENSG00000182670 ENST00000354749 protein_coding 1 1 0 2 0 0 0 0 0 0 1 3 0 1 0 U2AF1 ENSG00000160201 ENST00000291552 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 UMODL1 ENSG00000177398 ENST00000408989 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 USP16 ENSG00000156256 ENST00000334352 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 USP25 ENSG00000155313 ENST00000400183 protein_coding 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 ZBTB21 ENSG00000173276 ENST00000310826 protein_coding 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0