cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:215000001, elapsed 0.1s, est remaining 2.2s, peak mem 819MB, user 0.1s, sys 5.4s, output queue size 155
progress 10% @chr3:159000001, elapsed 0.2s, est remaining 2.0s, peak mem 819MB, user 0.2s, sys 14.5s, output queue size 316
progress 15% @chr4:37000001, elapsed 0.3s, est remaining 1.8s, peak mem 819MB, user 0.4s, sys 31.4s, output queue size 478
progress 20% @chr4:170000001, elapsed 0.4s, est remaining 1.7s, peak mem 819MB, user 0.4s, sys 45.6s, output queue size 640
progress 25% @chr5:138000001, elapsed 0.5s, est remaining 1.6s, peak mem 819MB, user 0.5s, sys 59.4s, output queue size 696
progress 30% @chr6:155000001, elapsed 0.6s, est remaining 1.5s, peak mem 819MB, user 0.6s, sys 73.3s, output queue size 857
progress 35% @chr8:5000001, elapsed 0.7s, est remaining 1.4s, peak mem 819MB, user 0.6s, sys 86.9s, output queue size 1019
progress 40% @chr8:140000001, elapsed 0.8s, est remaining 1.2s, peak mem 819MB, user 0.7s, sys 100.7s, output queue size 1181
progress 45% @chr9:61000001, elapsed 0.9s, est remaining 1.1s, peak mem 819MB, user 0.8s, sys 114.0s, output queue size 1342
progress 50% @chr11:91000001, elapsed 1.0s, est remaining 1.0s, peak mem 819MB, user 0.9s, sys 127.7s, output queue size 1504
progress 55% @chr12:45000001, elapsed 1.1s, est remaining 0.9s, peak mem 819MB, user 1.1s, sys 139.8s, output queue size 1665
progress 60% @chr13:101000001, elapsed 1.1s, est remaining 0.8s, peak mem 819MB, user 1.3s, sys 150.7s, output queue size 1828
progress 65% @chr15:8000001, elapsed 1.2s, est remaining 0.6s, peak mem 819MB, user 1.7s, sys 161.8s, output queue size 1989
progress 70% @chr16:2000001, elapsed 1.3s, est remaining 0.5s, peak mem 819MB, user 2.2s, sys 173.5s, output queue size 2150
progress 75% @chr16:27000001, elapsed 1.3s, est remaining 0.4s, peak mem 819MB, user 2.7s, sys 185.2s, output queue size 2312
progress 80% @chr20:20000001, elapsed 1.4s, est remaining 0.4s, peak mem 819MB, user 3.1s, sys 198.6s, output queue size 2474
progress 85% @chrX:135000001, elapsed 1.5s, est remaining 0.3s, peak mem 819MB, user 3.3s, sys 212.2s, output queue size 2662
progress 90% @chrX:114000001, elapsed 1.6s, est remaining 0.2s, peak mem 819MB, user 3.6s, sys 224.3s, output queue size 3073
progress 95% @chr19_GL949746v1_alt:1, elapsed 1.6s, est remaining 0.1s, peak mem 819MB, user 3.9s, sys 239.6s, output queue size 4141
progress 100% @HLA-DQB1*03:01:01:02:1, elapsed 2.0s, est remaining 0.0s, peak mem 819MB, user 4.4s, sys 264.4s, output queue size 507
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 57860
output file size: 46925
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 642 calls 0.000 user 0.000 sys 0.012 real
"predict_filter": 214 calls 0.025 user 0.011 sys 0.060 real
advance: 3219322 calls 0.401 user 109.302 sys 141.929 real
done: 1 calls 0.002 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.011 sys 2.109 real
fetch_ref: 624 calls 0.001 user 0.020 sys 0.152 real
idle: 20633 calls 0.805 user 0.238 sys 1013.911 real
init: 1 calls 0.362 user 0.094 sys 1.513 real
overall: 858963968 mem 6.154 user 271.477 sys 4.872 real