File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/2a658ef47e1ad21d28f4ba45b533e4/.command.err
Size
623 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (Sig_18_Blood)
Attempt

Content

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INFO: Loading models...
INFO: Reading VCF: Sig_18_Blood.entropy.vcf.gz
INFO: Loaded 395 variants (369 SNVs, 26 INDELs)
INFO:   INDEL entropy: 24 present, 2 missing (using -1 sentinel)
INFO: Annotating with BED files...
INFO:   Blacklist hits: 8
INFO:   Low depth hits: 0
INFO:   Boosted exon hits: 90
INFO:   SNV FP region hits: 32
INFO:   INDEL FP region hits: 10
INFO:   INDEL FP rate lookups (TSV): 15241 variant keys loaded
INFO:   RepeatMasker hits: 30
INFO: Applying models...
INFO: Results: 357 PASS (339 SNV, 18 INDEL), 38 RF_FAIL
INFO: Writing output VCF: Sig_18_Blood.haplotyper_rf.rf_filtered.vcf.gz
INFO: Done!