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Files (207)

Name Size Modified
.command.begin 6 bytes Jun 08, 2026 2:13 PM
.command.err 7.1 KB Jun 08, 2026 2:13 PM
.command.log 21.1 KB Jun 08, 2026 2:13 PM
.command.out 0 bytes Jun 08, 2026 2:13 PM
.command.run 39.4 KB Jun 08, 2026 2:13 PM
.command.sh 282 bytes Jun 08, 2026 2:13 PM
.command.trace 260 bytes Jun 08, 2026 2:13 PM
.command.yaml 3.4 KB Jun 08, 2026 2:13 PM
.exitcode 1 byte Jun 08, 2026 2:13 PM
multiqc_data/bcftools-stats-subtypes.txt 1.1 KB Jun 08, 2026 2:13 PM
multiqc_data/bcftools_stats_indel-lengths.txt 1.1 KB Jun 08, 2026 2:13 PM
multiqc_data/bcftools_stats_variant_depths.txt 22.1 KB Jun 08, 2026 2:13 PM
multiqc_data/bcftools_stats_vqc_Count_Indels.txt 12.4 KB Jun 08, 2026 2:13 PM
multiqc_data/bcftools_stats_vqc_Count_SNP.txt 12.4 KB Jun 08, 2026 2:13 PM
multiqc_data/bcftools_stats_vqc_Count_Transitions.txt 12.4 KB Jun 08, 2026 2:13 PM
multiqc_data/bcftools_stats_vqc_Count_Transversions.txt 12.4 KB Jun 08, 2026 2:13 PM
multiqc_data/consequences_all__plot_Coding_consequences.txt 909 bytes Jun 08, 2026 2:13 PM
multiqc_data/consequences_all__plot_Consequences_all_.txt 2.4 KB Jun 08, 2026 2:13 PM
multiqc_data/consequences_all__plot_Consequences_most_severe_.txt 2.1 KB Jun 08, 2026 2:13 PM
multiqc_data/llms-full.txt 123.9 KB Jun 08, 2026 2:13 PM
multiqc_data/mosdepth-coverage-per-contig-single.txt 141 bytes Jun 08, 2026 2:13 PM
multiqc_data/mosdepth-cumcoverage-dist-id.txt 27.4 KB Jun 08, 2026 2:13 PM
multiqc_data/mosdepth-xy-coverage-plot.txt 117 bytes Jun 08, 2026 2:13 PM
multiqc_data/mosdepth_cov_dist.txt 21.9 KB Jun 08, 2026 2:13 PM
multiqc_data/mosdepth_cumcov_dist.txt 21.9 KB Jun 08, 2026 2:13 PM
multiqc_data/mosdepth_perchrom.txt 141 bytes Jun 08, 2026 2:13 PM
multiqc_data/multiqc.log 36.2 KB Jun 08, 2026 2:13 PM
multiqc_data/multiqc.parquet 2.5 MB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_bcftools_stats.txt 1.7 KB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_citations.txt 427 bytes Jun 08, 2026 2:13 PM
multiqc_data/multiqc_data.json 2.2 MB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_general_stats.txt 3.3 KB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_samtools_stats.txt 2.8 KB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_snpeff.txt 7.5 KB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_software_versions.txt 3.6 KB Jun 08, 2026 2:13 PM
multiqc_data/multiqc_sources.txt 6.6 KB Jun 08, 2026 2:13 PM
multiqc_data/polyphen_summary_plot.txt 401 bytes Jun 08, 2026 2:13 PM
multiqc_data/position_in_protein_plot.txt 765 bytes Jun 08, 2026 2:13 PM
multiqc_data/samtools-stats-dp.txt 813 bytes Jun 08, 2026 2:13 PM
multiqc_data/samtools_alignment_plot.txt 189 bytes Jun 08, 2026 2:13 PM
multiqc_data/sift_summary_plot.txt 426 bytes Jun 08, 2026 2:13 PM
multiqc_data/snpeff_effects.txt 1.4 KB Jun 08, 2026 2:13 PM
multiqc_data/snpeff_qualities.txt 5.3 KB Jun 08, 2026 2:13 PM
multiqc_data/snpeff_variant_effects_class.txt 329 bytes Jun 08, 2026 2:13 PM
multiqc_data/snpeff_variant_effects_impact.txt 858 bytes Jun 08, 2026 2:13 PM
multiqc_data/snpeff_variant_effects_region.txt 1.0 KB Jun 08, 2026 2:13 PM
multiqc_data/variant_classes_plot.txt 1.0 KB Jun 08, 2026 2:13 PM
multiqc_data/variants_by_chromosome_plot.txt 924 bytes Jun 08, 2026 2:13 PM
multiqc_data/vcftools_tstv_by_count.txt 1.0 KB Jun 08, 2026 2:13 PM
multiqc_data/vcftools_tstv_by_qual.txt 13.8 KB Jun 08, 2026 2:13 PM
multiqc_data/vep-general-stats.txt 1.2 KB Jun 08, 2026 2:13 PM
multiqc_data/vep.txt 11.9 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools-stats-subtypes-cnt.pdf 12.8 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools-stats-subtypes-pct.pdf 13.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_indel-lengths-cnt.pdf 10.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_indel-lengths-log.pdf 11.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_variant_depths.pdf 15.8 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Indels.pdf 12.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_SNP.pdf 12.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Transitions.pdf 13.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Transversions.pdf 13.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/consequences_all__plot_Coding_consequences-cnt.pdf 12.9 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/consequences_all__plot_Coding_consequences-pct.pdf 13.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_all_-cnt.pdf 16.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_all_-pct.pdf 16.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_most_severe_-cnt.pdf 14.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_most_severe_-pct.pdf 15.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/mosdepth-coverage-per-contig-single-cnt.pdf 11.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/mosdepth-coverage-per-contig-single-pct.pdf 11.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/mosdepth-cumcoverage-dist-id.pdf 13.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/mosdepth-xy-coverage-plot-cnt.pdf 10.9 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/mosdepth-xy-coverage-plot-pct.pdf 11.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/polyphen_summary_plot-cnt.pdf 13.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/polyphen_summary_plot-pct.pdf 13.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/position_in_protein_plot-cnt.pdf 13.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/position_in_protein_plot-pct.pdf 13.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/samtools-stats-dp.pdf 25.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/samtools_alignment_plot-cnt.pdf 12.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/samtools_alignment_plot-pct.pdf 12.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/sift_summary_plot-cnt.pdf 13.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/sift_summary_plot-pct.pdf 13.8 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_effects-cnt.pdf 15.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_effects-pct.pdf 15.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_qualities.pdf 10.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_class-cnt.pdf 12.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_class-log.pdf 12.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_class-pct-log.pdf 12.9 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_class-pct.pdf 13.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-cnt.pdf 13.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-log.pdf 13.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-pct-log.pdf 14.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-pct.pdf 14.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_region-cnt.pdf 14.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_region-log.pdf 14.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_region-pct-log.pdf 15.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/snpeff_variant_effects_region-pct.pdf 14.9 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/variant_classes_plot-cnt.pdf 12.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/variant_classes_plot-pct.pdf 13.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/variants_by_chromosome_plot-cnt.pdf 12.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/variants_by_chromosome_plot-pct.pdf 13.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/vcftools_tstv_by_count.pdf 10.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/vcftools_tstv_by_qual.pdf 14.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/pdf/vep-general-stats.pdf 19.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools-stats-subtypes-cnt.png 164.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools-stats-subtypes-pct.png 157.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_indel-lengths-cnt.png 130.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_indel-lengths-log.png 153.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_variant_depths.png 197.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Indels.png 112.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_vqc_Count_SNP.png 106.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Transitions.png 111.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Transversions.png 111.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/consequences_all__plot_Coding_consequences-cnt.png 196.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/consequences_all__plot_Coding_consequences-pct.png 189.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/consequences_all__plot_Consequences_all_-cnt.png 297.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/consequences_all__plot_Consequences_all_-pct.png 300.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/consequences_all__plot_Consequences_most_severe_-cnt.png 275.8 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/consequences_all__plot_Consequences_most_severe_-pct.png 277.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/mosdepth-coverage-per-contig-single-cnt.png 67.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/mosdepth-coverage-per-contig-single-pct.png 62.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/mosdepth-cumcoverage-dist-id.png 180.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/mosdepth-xy-coverage-plot-cnt.png 68.1 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/mosdepth-xy-coverage-plot-pct.png 70.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/polyphen_summary_plot-cnt.png 99.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/polyphen_summary_plot-pct.png 98.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/position_in_protein_plot-cnt.png 135.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/position_in_protein_plot-pct.png 137.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/samtools-stats-dp.png 238.8 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/samtools_alignment_plot-cnt.png 78.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/samtools_alignment_plot-pct.png 74.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/sift_summary_plot-cnt.png 97.8 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/sift_summary_plot-pct.png 101.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_effects-cnt.png 191.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_effects-pct.png 196.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_qualities.png 131.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_class-cnt.png 92.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_class-log.png 92.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_class-pct-log.png 92.7 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_class-pct.png 91.2 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_impact-cnt.png 161.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_impact-log.png 159.5 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_impact-pct-log.png 157.7 KB Jun 08, 2026 2:13 PM
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multiqc_plots/png/snpeff_variant_effects_region-pct-log.png 166.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/snpeff_variant_effects_region-pct.png 163.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/variant_classes_plot-cnt.png 167.9 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/variant_classes_plot-pct.png 168.6 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/variants_by_chromosome_plot-cnt.png 164.9 KB Jun 08, 2026 2:13 PM
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multiqc_plots/png/vcftools_tstv_by_count.png 96.0 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/vcftools_tstv_by_qual.png 164.4 KB Jun 08, 2026 2:13 PM
multiqc_plots/png/vep-general-stats.png 137.3 KB Jun 08, 2026 2:13 PM
multiqc_plots/svg/bcftools-stats-subtypes-cnt.svg 44.8 KB Jun 08, 2026 2:13 PM
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multiqc_plots/svg/variants_by_chromosome_plot-cnt.svg 22.7 KB Jun 08, 2026 2:13 PM
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multiqc_plots/svg/vep-general-stats.svg 94.5 KB Jun 08, 2026 2:13 PM
multiqc_report.html 2.5 MB Jun 08, 2026 2:13 PM
versions.yml 48 bytes Jun 08, 2026 2:13 PM