.command.err - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr)

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/6a07da31544dbf1f361be7ca42fe2d/.command.err
Size: 144 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr)
Attempt

[mpileup] 1 samples in 1 input files
[mpileup] maximum number of reads per input file set to -d 250
ls: *.mpileup.gz: No such file or directory