Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/2ea81f6330aa599a20d31a77640f68/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/253e9038d239bba3c7ead946c79ea2/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/253e9038d239bba3c7ead946c79ea2/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_tissue/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_34799195-34799564.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_tissue/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/2ea81f6330aa599a20d31a77640f68/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_34799195-34799564.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (12 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T20:44:41.736581Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:44:41.737182Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T20:44:41.737191Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:44:41.737195Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:44:41.737200Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXWI6g8V'
[2026-06-08T20:44:41.737203Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T20:44:41.737208Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:44:41.737212Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T20:44:41.737215Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:44:41.737219Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T20:44:41.737222Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:44:41.737226Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:44:41.737230Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:44:41.737236Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:44:41.738187Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:44:41.738261Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T20:44:41.744556Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T20:44:41.745311Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T20:44:41.745623Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:44:41.745792Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T20:44:41.745976Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.746852Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.747651Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.747850Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.748087Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.748327Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.748475Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.748594Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.748664Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.763890Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.764172Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T20:44:41.764425Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.764606Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.764724Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.764803Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.764881Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.764949Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.765025Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.765096Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:44:41.765143Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T20:44:41.797461Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.797724Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.798321Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.799211Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.800233Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.804487Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:44:41.806186Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:44:41.807966Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:41.810428Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:44:41.915401Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.915467Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.915721Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.916329Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.919713Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:41.920824Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:44:41.950422Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.966077Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.966349Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:41.969286Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:42.030361Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:45.050136Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:45.050548Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:44:45.053575Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:44:45.114900Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.790691Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.791512Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.794726Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:47:00.855866Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.856014Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.856138Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.857373Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.858187Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T20:47:00.858656Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.861505Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T20:47:00.862415Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T20:47:00.892137Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.892204Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.892231Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.892405Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.892997Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.895387Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T20:47:00.896158Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T20:47:00.926965Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.927026Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.927194Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:47:00.929399Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T20:47:00.959001Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:47:14.982625Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T20:47:29.958534Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T20:47:29.958534Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] 
[2026-06-08T20:47:29.958534Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T20:47:29.958653Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] 
[2026-06-08T20:47:29.958664Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:47:29.958673Z] [nf-482ea81f6330aa599a20d31a77640f68-a8cc0-2dpzs] [701_1] [WorkflowRunner] Elapsed time for full workflow: 168 sec