Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/09fd1d3d934cd5831ebed6de2fcaa0/Sig_18_Blood_custom.ann_snpEff.ann.vcf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/2b9c2b5feba8639493d1c49eb849dc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/2b9c2b5feba8639493d1c49eb849dc/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory