Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/a74b3d75591286af6702278d4ec6cc/custom_Sig_18_tumor_normal.snv_indel.phased.vep.vcf.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/31a6788968d48094a53f7678e2e2a3/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/31a6788968d48094a53f7678e2e2a3/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/hotspots/hotspot_definitions.tsv ==> STAGING COMPLETE (4 inputs) Loaded 73 hotspot definitions Processed 252 variants, labeled 0 as HOTSPOT