.command.sh - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (HCC1395_tumor_vs_HCC1395_BL;snv_indel)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/26e923d2a6f8f043270dc660c02b68/.command.sh
Size: 326 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (HCC1395_tumor_vs_HCC1395_BL;snv_indel)
Attempt

Content

#!/bin/bash -Ceuo pipefail
tabix \
    --threads 1 \
     \
    HCC1395_tumor_vs_HCC1395_BL.snv_indel.phased.vep.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:TABIX_VEP":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS