.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/70ca7633750e2ac4f92184bf73c651/.command.log
Size: 1.2 KB
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/e0c05d894b0829e4f2e39145fe1223/chip_pon.chip_pon.harmonized.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/70ca7633750e2ac4f92184bf73c651/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/70ca7633750e2ac4f92184bf73c651/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/46aad6a83f9661332f665cf247fba9/HCC1395_BL.GERMLINE.merged.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/e0c05d894b0829e4f2e39145fe1223/chip_pon.chip_pon.harmonized.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/46aad6a83f9661332f665cf247fba9/HCC1395_BL.GERMLINE.merged.vcf.gz
==> STAGING COMPLETE (6 inputs)

[INFO] Reading target VCF: HCC1395_BL.GERMLINE.merged.vcf.gz
[INFO] Reading source VCF: chip_pon.chip_pon.harmonized.vcf.gz
[INFO] Adding header fields with prefix 'CHIP_PON' for: FRACTION
[INFO] Building source variant lookup...
[INFO] Found 365410 variants in source VCF
[INFO] Processing target variants and merging characteristics...
[INFO] Complete! Processed 254 variants, matched 196 (77.2%)
[SUCCESS] VCF merging completed successfully!