File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/71a8144171885a4c1835e11e23535b/.command.log
Size
2.2 KB
Task
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/2da8a0a3d5076f88d07f5894fb9088/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/48ddeb627f5b4b2ca3add1b540a52e/custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/d500feefb16cef958b8772aba44250/custom_Sig_18_tumor_normal.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/0840cfda3d7082dfcf29db20b59751/HCC1395_BL.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/42a0c62a6d93ef95151efea5ab01ad/custom_Sig_18_tumor_normal.strelka.somatic_indels.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/85c54ed9e4342a51f64d3773d0ef68/Sig_18_Blood.deconfliction_audit.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/732725524c57ca19f9342848bc230c/HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/2835f892b8d3b2287030db805c46e8/ngscheckmate_all.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/acf7d2e6df1053726988b02871c73b/Sig_18_tissue_vs_Sig_18_Blood.conpair.contamination.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/71a8144171885a4c1835e11e23535b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/0c23ca3450afea240b1ca61b565b4b/Sig_18_Blood.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/87e718e2b3cacda4b7bf384c84719e/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/71a8144171885a4c1835e11e23535b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/10d0871782b6023fe8746613c8bb65/HCC1395_tumor_vs_HCC1395_BL.conpair.contamination.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/69e2855cd56298be54a0f332828461/HCC1395_BL.deconfliction_audit.tsv
==> STAGING COMPLETE (15 inputs)

Variant QC aggregation complete: 3 pairs, 2 samples
Output: variant_qc.json