.command.sh - Workdir - NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX (custom_Sig_18_tumor_normal;manta)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/5bb458b8e8b1b5e6c79a7797479cc8/.command.sh
Size: 331 bytes
Task: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX (custom_Sig_18_tumor_normal;manta)
Attempt

Content

#!/bin/bash -Ceuo pipefail
tabix \
    --threads 1 \
     \
    custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS