Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/ef7c1d81574cbb3595b74af07931da/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff.ann.vcf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/61428c0675f758f719b65e9d9fc84d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/61428c0675f758f719b65e9d9fc84d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory