Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/835c05f39fc51aee60985d2b091ac9/HCC1395_BL.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/79411f70f04c5d04256b8bd14144f2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/79411f70f04c5d04256b8bd14144f2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/835c05f39fc51aee60985d2b091ac9/HCC1395_BL.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/efbe37b65923c8953bc5fc5a25de3b/HCC1395_BL.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/efbe37b65923c8953bc5fc5a25de3b/HCC1395_BL.haplotyper.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.nhughv
Merging 1 temporary files
Done
Cleaning