Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_44102678-44103072.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/d722738c549e50523865e7de8d9e75/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_44102678-44103072.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e3ed9d55ac1f3dfe6a268d860125cc/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e3ed9d55ac1f3dfe6a268d860125cc/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/d722738c549e50523865e7de8d9e75/.command.run
==> STAGING COMPLETE (12 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T20:44:37.278922Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:44:37.280083Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T20:44:37.280109Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:44:37.280115Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:44:37.280120Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX95nRxi'
[2026-06-08T20:44:37.280123Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T20:44:37.280128Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:44:37.280132Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T20:44:37.280135Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:44:37.280139Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T20:44:37.280142Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:44:37.280146Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:44:37.280149Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:44:37.280153Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:44:37.281000Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:44:37.281058Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T20:44:37.286753Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T20:44:37.287514Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:44:37.288129Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T20:44:37.288386Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T20:44:37.288537Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.290164Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.290895Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.291044Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.291125Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.291291Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.291386Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.291904Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.293905Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.294934Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T20:44:37.305871Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.305979Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306047Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306134Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306205Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306281Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306352Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306427Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306561Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:44:37.306606Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T20:44:37.343032Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.343379Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.343876Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.344323Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.344948Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.347887Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:44:37.352069Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:37.352400Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:44:37.353464Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:44:37.461012Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.461097Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.461127Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.461428Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.462119Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.464133Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.466303Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:44:37.468198Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:44:37.469351Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:37.499244Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.499415Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.531364Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.531651Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:37.534495Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:37.595794Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.167711Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.168968Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.172633Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:44:51.283989Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.284709Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.285447Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.286561Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.290113Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.291138Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T20:44:51.293939Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T20:44:51.294704Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T20:44:51.324328Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.324418Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.324443Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.324707Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.325386Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.328124Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T20:44:51.329263Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T20:44:51.358440Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.358501Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.358665Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:44:51.361461Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T20:44:51.390821Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:56.214999Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T20:45:10.399895Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T20:45:10.399895Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] 
[2026-06-08T20:45:10.399895Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T20:45:10.399985Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] 
[2026-06-08T20:45:10.399994Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:45:10.400001Z] [nf-b1d722738c549e50523865e7de8d9e75-3c75d-4z7fn] [691_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec