#!/bin/bash -Ceuo pipefail vcftools \ --gzvcf HCC1395_BL.vcf.gz \ --out HCC1395_BL \ --FILTER-summary \ \ cat <<-END_VERSIONS > versions.yml "NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_SUMMARY": vcftools: $(echo $(vcftools --version 2>&1) | sed 's/^.*VCFtools (//;s/).*//') END_VERSIONS