.command.sh - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (Sig_18_Blood;sentieon_haplotyper_rf)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/79ac160eae20f93587c92ea5b6ad58/.command.sh
Size: 287 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (Sig_18_Blood;sentieon_haplotyper_rf)
Attempt

Content

#!/bin/bash -Ceuo pipefail
tabix \
    --threads 1 \
     \
    Sig_18_Blood.haplotyper_rf.gt_corrected.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS