Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a282efa93e3fdb0ec863b8ad3a9a79/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/9992d82600b91ef5227b68ba175482/HCC1395_BL.prefiltered.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/0c6d2b584716049ab2975d85cf2dff/HCC1395_BL.tumor_genotyped.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/0c6d2b584716049ab2975d85cf2dff/HCC1395_BL.tumor_genotyped.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/9992d82600b91ef5227b68ba175482/HCC1395_BL.prefiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a282efa93e3fdb0ec863b8ad3a9a79/.command.run
==> STAGING COMPLETE (8 inputs)

Lines   total/split/joined/realigned/skipped:	0/0/0/0/0
[INFO] Indexing tumor force-call VCF: tumor_norm.vcf.gz
[INFO] Tumor: 0 alleles indexed
[INFO] Processed 254 variants
[INFO] Blood: 254 annotated, 0 missing
[INFO] Tumor: 0 annotated, 254 missing