#!/bin/bash -Ceuo pipefail
bcftools \
    sort \
    --output Sig_18_Blood.chip.harmonized.vcf.gz \
    --temp-dir . \
    --output-type z --write-index=tbi \
    Sig_18_Blood.chip.normalized.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT":
    bcftools: $(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*$//')
END_VERSIONS