#!/bin/bash -Ceuo pipefail
diff_dv_sentieon.py \
    --dv-vcf HCC1395_BL.dv_rescue.vcf.gz \
    --sentieon-vcf HCC1395_BL.haplotyper.unfiltered.vcf.gz \
    --output-vcf HCC1395_BL.dv_only_sites.vcf.gz

tabix -p vcf HCC1395_BL.dv_only_sites.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON":
    python: $(python --version | sed 's/Python //g')
    cyvcf2: $(python -c "import cyvcf2; print(cyvcf2.__version__)")
END_VERSIONS