Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/0096e73cb7a47693d624bdc812d747/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/253e9038d239bba3c7ead946c79ea2/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/253e9038d239bba3c7ead946c79ea2/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_tissue/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_tissue/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/0096e73cb7a47693d624bdc812d747/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (12 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXROwIBc/chr21_5117003-5117331.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXROwIBc/chr21_5117003-5117331.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXROwIBc/chr21_5117003-5117331.bed.gz.tbi
[2026-06-08T20:44:44.387864Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:44:44.389129Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T20:44:44.389156Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:44:44.389162Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:44:44.389167Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXROwIBc'
[2026-06-08T20:44:44.389171Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T20:44:44.389176Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:44:44.389180Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T20:44:44.389184Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:44:44.389188Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T20:44:44.389191Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:44:44.389195Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:44:44.389198Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:44:44.389202Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:44:44.390091Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:44:44.390148Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T20:44:44.395894Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T20:44:44.396636Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T20:44:44.396853Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:44:44.397083Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T20:44:44.397236Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.398382Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.398585Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.398712Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.398802Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.399231Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.399599Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.399810Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.400515Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.402112Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T20:44:44.414204Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414310Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414378Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414462Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414534Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414612Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414679Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414752Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414832Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:44:44.414896Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T20:44:44.437866Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.438129Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.438712Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.439579Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.442634Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.443066Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:44:44.443281Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:44:44.446360Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:44:44.447539Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:44.507881Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.508176Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:44:44.511009Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:44:44.572522Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:48.193490Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:48.193855Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:48.196401Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:48.257983Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:48.258262Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:44:48.260695Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:44:48.322339Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:50.340868Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:44:50.341209Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:44:50.343930Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:44:50.405503Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.080427Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.080870Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.083506Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:45:20.146348Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.146517Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.146651Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.147024Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.147509Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.150089Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T20:45:20.151799Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T20:45:20.152653Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T20:45:20.180055Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.180129Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.180329Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.180858Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.184248Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.184719Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T20:45:20.210401Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T20:45:20.216287Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.216348Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.216510Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:45:20.219025Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T20:45:20.248495Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:45:32.567090Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T20:45:47.508954Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T20:45:47.508954Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] 
[2026-06-08T20:45:47.508954Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T20:45:47.509054Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] 
[2026-06-08T20:45:47.509064Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:45:47.509071Z] [nf-fc0096e73cb7a47693d624bdc812d747-933d4-gfjkh] [690_1] [WorkflowRunner] Elapsed time for full workflow: 63 sec