#!/bin/bash -Ceuo pipefail
cnvkit.py call \
    Sig_18_tissue.recalibrated.cns \
     \
     \
    -o Sig_18_tissue.recalibrated.somatic.call.cns

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL":
    cnvkit: $(cnvkit.py version | sed -e 's/cnvkit v//g')
END_VERSIONS