.command.sh - Workdir - NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (custom_Sig_18_tumor_normal;strelka)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/48ddeb627f5b4b2ca3add1b540a52e/.command.sh
Size: 412 bytes
Task: NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (custom_Sig_18_tumor_normal;strelka)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bcftools stats \
     \
     \
     \
     \
     \
     \
    custom_Sig_18_tumor_normal.strelka.somatic_snvs.vcf.gz > custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS":
    bcftools: $(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*$//')
END_VERSIONS