cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --max_event_count 5 -v HCC1395_BL.tnseq_tumor_only.vcf.gz --contamination HCC1395_BL.tnseq_tumor_only.contamination_data.tsv --tumor_segments HCC1395_BL.tnseq_tumor_only.segments --orientation_priors HCC1395_BL.tnseq_tumor_only.orientation_data.tsv HCC1395_BL.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:217000001, elapsed 0.1s, est remaining 2.3s, peak mem 810MB, user 0.3s, sys 3.0s, output queue size 154
progress 10% @chr2:139000001, elapsed 0.2s, est remaining 2.0s, peak mem 810MB, user 0.6s, sys 10.2s, output queue size 315
progress 15% @chr4:23000001, elapsed 0.3s, est remaining 1.9s, peak mem 810MB, user 0.8s, sys 18.1s, output queue size 460
progress 20% @chr3:191000001, elapsed 0.4s, est remaining 1.7s, peak mem 810MB, user 1.0s, sys 27.0s, output queue size 621
progress 25% @chr5:81000001, elapsed 0.5s, est remaining 1.5s, peak mem 810MB, user 1.2s, sys 36.0s, output queue size 782
progress 30% @chr6:24000001, elapsed 0.6s, est remaining 1.4s, peak mem 810MB, user 1.4s, sys 45.2s, output queue size 943
progress 35% @chr6:162000001, elapsed 0.7s, est remaining 1.3s, peak mem 810MB, user 1.5s, sys 54.6s, output queue size 1104
progress 40% @chr7:135000001, elapsed 0.8s, est remaining 1.2s, peak mem 810MB, user 1.6s, sys 63.5s, output queue size 1210
progress 45% @chr8:115000001, elapsed 0.9s, est remaining 1.1s, peak mem 810MB, user 1.7s, sys 73.6s, output queue size 1371
progress 50% @chr9:125000001, elapsed 0.9s, est remaining 0.9s, peak mem 810MB, user 1.9s, sys 82.4s, output queue size 1532
progress 55% @chr1:227000001, elapsed 1.0s, est remaining 0.8s, peak mem 810MB, user 2.1s, sys 85.9s, output queue size 1647
progress 60% @chr10:122000001, elapsed 1.2s, est remaining 0.8s, peak mem 810MB, user 2.2s, sys 86.9s, output queue size 1809
progress 65% @chr15:78000001, elapsed 1.3s, est remaining 0.7s, peak mem 810MB, user 2.6s, sys 91.6s, output queue size 1970
progress 70% @chr16:83000001, elapsed 1.4s, est remaining 0.6s, peak mem 810MB, user 2.7s, sys 98.3s, output queue size 2132
progress 75% @chr18:66000001, elapsed 1.5s, est remaining 0.5s, peak mem 810MB, user 2.9s, sys 107.3s, output queue size 2295
progress 80% @chr12:33000001, elapsed 1.6s, est remaining 0.4s, peak mem 810MB, user 3.1s, sys 115.6s, output queue size 2456
progress 85% @chrX:75000001, elapsed 1.6s, est remaining 0.3s, peak mem 810MB, user 3.5s, sys 124.7s, output queue size 2625
progress 90% @chr13:37000001, elapsed 1.7s, est remaining 0.2s, peak mem 810MB, user 3.8s, sys 139.5s, output queue size 2967
progress 95% @chr13:73000001, elapsed 1.8s, est remaining 0.1s, peak mem 810MB, user 4.2s, sys 159.3s, output queue size 3701
progress 100% @HLA-DQA1*04:01:02:02:1, elapsed 1.9s, est remaining 0.0s, peak mem 810MB, user 4.5s, sys 184.9s, output queue size 925
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 51811
output file size: 43438
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 540 calls 0.001 user 0.000 sys 0.010 real
"predict_filter": 180 calls 0.002 user 0.035 sys 0.347 real
advance: 3219322 calls 0.662 user 77.035 sys 117.852 real
done: 1 calls 0.001 user 0.001 sys 0.006 real
execute: 1 calls 0.009 user 0.007 sys 2.051 real
fetch_ref: 528 calls 0.001 user 0.139 sys 1.470 real
idle: 20633 calls 0.852 user 0.191 sys 1088.703 real
init: 1 calls 0.441 user 0.101 sys 1.694 real
overall: 849555456 mem 6.000 user 190.235 sys 4.985 real