Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e243f28ae5e55426490d952cf86c0b/HCC1395_BL.tnseq_tumor_only.filtered_snpEff.ann.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e243f28ae5e55426490d952cf86c0b/HCC1395_BL.tnseq_tumor_only.filtered_snpEff.ann.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/5a10ee865d20a4ced9bc4a5621862d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/5a10ee865d20a4ced9bc4a5621862d/.command.run
==> STAGING COMPLETE (5 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	180/29/0/67/0/0/0
ls: cannot access '*.vcf': No such file or directory
ls: cannot access '*.bcf': No such file or directory
ls: cannot access '*.bcf.gz': No such file or directory
ls: cannot access '*.csi': No such file or directory