File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/4a23f9e68c229dd73e363f69b648c2/.command.log
Size
1.3 KB
Task
SOMATIC_CNV_REF_BUILDER:SOMA_CNV_PROBE_COUNTS (HCC1395_BL)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/4a23f9e68c229dd73e363f69b648c2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/4a23f9e68c229dd73e363f69b648c2/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/bed/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_chr21.bed
ERROR "ls s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam HCC1395_BL.recalibrated.bam": NoSuchKey: The specified key does not exist. status code: 404, request id: 8X1C8BZC208RTM00, host id: +XwaoGiCCsUbJkuOtqF+zqSuUen0igZ5mw1EXPI1hi+t3ofOF9KFwOFSFQRA8JL1leyW9F48/XsGLNUvxZ4BgfHzVW6b8On6