File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/4c0e9cbd859a7304f5d463c8f793de/.command.log
Size
2.1 KB
Task
SOMATIC_CNV_REF_BUILDER:SOMA_CNV_PROBE_COUNTS (Sig_18_Blood)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/4c0e9cbd859a7304f5d463c8f793de/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/4c0e9cbd859a7304f5d463c8f793de/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam
ERROR "ls s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam": no object found
ERROR "ls s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam Sig_18_Blood.recalibrated.bam": NoSuchKey: The specified key does not exist. status code: 404, request id: ZSVFZVWF5W1E26C4, host id: gC0gHUF5lWp1X67ng0EHW6bfDhOL2p0WQVxlYCxYx5hbbpMlDf4qtk2OMasWpy2Pg9Hk+nHBeqI=
ERROR "cp s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai Sig_18_Blood.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: ZSVFVJ0N5ZRZ06W7, host id: ExXaNk5qZtnzYdfp+AjfkOZHgqoTIzS4fXMxW3HsfrNRH9asTQ6K++Dj0NgOLCad0uFQ8DjYfms=