File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2a0db4a5c311d0558f4141691bac4f/.command.log
Size
2.1 KB
Task
SOMATIC_CNV_REF_BUILDER:SOMA_CNV_PROBE_COUNTS (Sig_18_Blood)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2a0db4a5c311d0558f4141691bac4f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2a0db4a5c311d0558f4141691bac4f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam
ERROR "ls s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam": no object found
ERROR "ls s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam Sig_18_Blood.recalibrated.bam": NoSuchKey: The specified key does not exist. status code: 404, request id: 9R3DVRG3RPKJJ6GR, host id: ipK0RTUculYquJvxjBMzXHvoWdZDpL4JZ1Z8CwQ4ZE47YqE2kLXwlU8Cj025MbVLmtPtG9Hcx+M=
ERROR "cp s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai Sig_18_Blood.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: 9R33DBN3DA8PNKT5, host id: mJlh23dKK+FbW+BdknT10pfME8LlLkNjzea/CB0esOTfjXg1KGKwNcJQvZB6h8slpkDpCEL2kOT/XoZIb+gAEjXkiRfUFkf9LGk6b3zD1Vw=